john hawks weblog

paleoanthropology, genetics and evolution

History dissertations under wraps

Sun, 2013-08-04 15:12 -- John Hawks

Via a reader, this article in the New York Times about the American Historical Association's vote to recommend that newly-minted PhDs be allowed to hide their dissertations away: "Historians Seek a Delay in Posting Dissertations".

And the way things are, he said, is that university presses are known to be skeptical about agreeing to publish a book when the Ph.D dissertation it is based on is readily available online.

“If you want tenure at a university, you have to publish a book,” he said. “It’s professional currency.”

This term, “embargo” — so common in how journalism doles out information in the digital age — perhaps is evidence that some academics are learning from journalists: readers simply have less interest in old news, even old news about the British colonies.

The historical association, which is based in Washington and has 14,000 members, including high school teachers, government historians and university professors, was inspired to act, officials said, because of simmering concerns that institutions were moving to require that students’ work be shared freely.

This concept is so bizarre to me that I had to suspend disbelief to read it.

Seriously, so the AHA thinks that university presses would publish more history dissertations if they were kept secret, and that would promote the careers of more young historians? Let me just point out that this entire scheme depends on university presses publishing more books than they do now. And that the chief market for university press history books is university libraries...

How a MOOC can affect the classroom

Sat, 2013-08-03 13:15 -- John Hawks

Duke University evolutionary biologist Mohamed Noor reflects on the way that teaching a MOOC has changed his classroom teaching: "The classroom experience reimagined". Noor began teaching a MOOC with Coursera last year: "Introduction to Genetics and Evolution", in conjunction with a regular course he teaches to 400 undergraduates at Duke.

My tentative conclusion is that it’s worth it. The types of questions I get now are (almost) never about repeating something I just said, but more about placing the material into a broader context or tying it to other topics. I perceive much more higher-level thinking about the material, and I am able to have students grasp concepts with which I recall struggling even as a graduate student. The performance on most of the assessments has gone up. As one (slightly grouchy) student put it: “Of course we’re doing better. You’re making us work more on the same material.”

...

From this point, I’ll feel that I’m cheating my students if I give a class that is purely passive and lecture-based. If all I did was lecture, then I would be delivering little or no more value to these students than what they could obtain from something to which they have easy access—the evergrowing number of MOOCs.

My experience filming segments for my MOOC has been amazing so far, and I have to say the resulting videos are way better than a classroom lecture. With a classroom lecture I can't possibly recreate the experience of being in the field, talking to experts about their work as they are doing it.

Professors are used to a role in which, in the classroom, they are the local experts on everything that they teach. Technology now makes it possible for a professor to be a local guide to global experts. I think that is a really positive change from the students' perspective, but it is a different role than most professors have been playing.

Josh Snodgrass profile

Fri, 2013-08-02 16:35 -- John Hawks

The Scientist is running a profile of University of Oregon anthropologist Josh Snodgrass, who studies the biology of indigenous peoples of Siberia and Ecuador: "Josh Snodgrass: An Adaptive Mind".

In 2001, as a PhD student under Leonard at Northwestern University, Snodgrass started a field project studying indigenous populations in northeastern Siberia to understand how long-term environmental adaptation shapes biological responses to culturally induced lifestyle changes.

In the early 2000s, indigenous Siberians called the Yakut began to abandon traditional ways of life, meaning they became less physically active and ate more high-calorie Western foods. As a result, Snodgrass found, they developed high blood pressure and an increased risk of stroke, but maintained low cholesterol levels. Pima people of the southwestern United States, on the other hand, when faced with similar lifestyle changes, developed high cholesterol and an increased risk of diabetes, but maintained low blood pressure.

This is some of the most valuable anthropological work, observing ongoing changes in human diet and behavior and tracking their effects. By understanding how human biology changes, we can see what the limits of plasticity were in past populations as well as understanding the way that different dietary and activity influences affect people as societies become more sedentary.

Medieval brain illustrations

Fri, 2013-08-02 16:16 -- John Hawks

Triplecanopy has a fascinating visual-text piece by Isabelle Moffat about the depiction of the brain from the Middle Ages to today: "This is your brain on paper".

More than anything, looking at historical representations of the brain reveals their absolute contingency: Every period has its own tools and instruments—intellectual and physical—and their limitations never seem to be fully grasped. Only when the next tool comes along, or the paradigm shifts, do changes in the questions we ask also make possible other answers.

I nearly missed the click-through series of medieval pictures in the middle of the story, with some incredible figures.

Quote: Benno Schmidt on academic freedom

Thu, 2013-08-01 16:13 -- John Hawks

From today's Wall Street Journal: "Benno Schmidt: Mitch Daniels's Gift to Academic Freedom"

If academics want to continue to enjoy the great privilege of academic freedom, they cannot forget the obligations that underline the grant of that privilege. The American Association of University Professors itself recognized those obligations in its seminal statement, the 1915 Declaration of Principles on Academic Freedom, which is today nearly forgotten: "If this profession should prove itself unwilling to purge its ranks of the incompetent and unworthy, or to prevent the freedom which it claims . . . from being used as a shelter for inefficiency, for superficiality, or for uncritical and intemperate partisanship, it is certain that the task will be performed by others."

"Cavemom parenting"

Thu, 2013-08-01 11:47 -- John Hawks

Heather Turgeon, in Babble, writes a note of skepticism about the "natural" mode of parenting: "The Science of Cavemom Parenting ­— and Whether You Should Try It".

This isn’t to say that I dismiss the “natural” way — far from it. Actually, I’m a mom who has opted for many of these ways myself: I adore the sling, I had a drug-free birth, and I’m breastfeeding my 18-month-old. I certainly support any choice that works for an individual family. But the idea that these practices or any other are superior because they’re how we’re “supposed” to do it is misleading. And it’s often used with backward logic to support a point of view or philosophy that people already have. As [Paleofantasy author Marlene] Zuk writes, “We have a regrettable tendency to see what we want to see and rationalize what we already want to do.”

If evolution teaches us anything, it's that human children in the past had to develop in a wide range of circumstances. In terms of emotional trauma, loss of caregivers, survival as orphans, extreme hunger, long recuperations from severe injuries, children in the past faced incredible challenges -- challenges that are still met and overcome by many children in the world today. Besides that, social groups in the past had incredibly different expectations and attitudes about childrearing, just as different societies do now. The genes in today's children had to survive all these varied circumstances. If there's one thing our children are adapted to, it is to survive the unexpected.

So it is nonsense to think that there is an "ideal form of parenting" to which children today have been genetically fine-tuned by their evolutionary history. The range of plasticity of outcomes is so wide that there is no sense trying to optimize beyond a certain point -- indeed, additional effort spent trying to be the "perfect parent" is probably going to subtract from the basic ability to be a good parent. What works well for one child may be very bad for another, because kids are variable.

That's the lesson of evolution: we should tolerate variability.

Lactase persistence in review

Wed, 2013-07-31 15:47 -- John Hawks

Nature this week has a nice news article about the evolution of lactase persistence by Andrew Curry: "Archaeology: The milk revolution". The article discusses the "LeCHE" project, a multi-million dollar grant that has involved ancient DNA, chemical trace residue analysis, and population genetic modeling work.

The LeCHE project may offer a model for how archaeological questions can be answered using a variety of disciplines and tools. “They have got a lot of different tentacles — archaeology, palaeoanthropology, ancient DNA and modern DNA, chemical analysis — all focused on one single question,” says Ian Barnes, a palaeogeneticist at Royal Holloway, University of London, who is not involved in the project. “There are lots of other dietary changes which could be studied in this way.”

The approach could, for example, help to tease apart the origins of amylase, an enzyme that helps to break down starch. Researchers have suggested that the development of the enzyme may have followed — or made possible — the increasing appetite for grain that accompanied the growth of agriculture. Scientists also want to trace the evolution of alcohol dehydrogenase, which is crucial to the breakdown of alcohol and could reveal the origins of humanity's thirst for drink.

I think it was a good use of money, getting a broad interdisciplinary group of people to focus on a well-understood evolutionary problem. It would be nice to see more exploratory work, and in particular the one-gene-one-trait model is not going to be nearly so productive for other questions of evolutionary interest to the Neolithic.

This article would be great for students in courses this fall. It is very Eurocentric, though -- the story of lactase persistence is much broader than the single European case, although that case has a greater archaeological record, and obviously more funding. When we can add similar detail to the story of trait evolution in Africa -- where lactase emerged in three different events instead of one -- we'll really be making progress.

Personal genomes may help students learn genetics

Fri, 2013-07-26 17:29 -- John Hawks

A new paper in PLoS ONE presents a small-scale study of the effects of personal genomics on learning genetics in the classroom [1]: "Evidence That Personal Genome Testing Enhances Student Learning in a Course on Genomics and Personalized Medicine".

The title of the paper really telegraphs the results, but the discussion gives some interesting connections to other work:

We also found evidence specifically suggesting that PGT [personal genome testing] positively impacts learning for those students who self-select to undergo it. The majority of genotyped students felt they acquired a better understanding of the principles of human genetics on the basis of undergoing PGT and that the genotyping was an important part of their learning in the course. Substantiating these beliefs, genotyped students significantly improved their knowledge scores by an average of 31%, while non-genotyped students showed no significant difference in knowledge scores. The performance of non-genotyped students is similar to that described in the study of students in our core medical school genetics course without PGT, where only a modest improvement was noted between pre-course and post-course knowledge scores [15]. Together, these data suggest that some students derive greater educational benefit by undergoing PGT and using personal genotype data in the classroom than students who strictly use publicly available data or no data at all. As has been suggested in other educational contexts [12], [13], [14], analyzing and interpreting data with personal relevance may encourage students to be more engaged with the material, leading to greater understanding and retention of knowledge.

This last part drew my attention (and I bold-faced it) because it aligns with some of the interactive elements of the MOOC I'm busy creating. My development team is really excited about our potential to make students active participants in research by giving them chances to contribute small, crowdsourced data. By giving a personalized report on the data, we hope to increase engagement without drowning students in work.

In the meantime, this study of personal genome testing was very small, with fewer than 50 students. It will be important to replicate this result in larger samples of students, particularly those in groups where motivation to learn biology varies more widely. Seems to me that nontraditional learners may be most affected by the availability of personalized data, and I am very interested in learning tools that apply much more widely than college classrooms.


References

Mike Morwood obituary

Fri, 2013-07-26 15:59 -- John Hawks

Kate Wong notes the death of Mike Morwood, archaeologist, rock art expert, and co-discoverer of the Liang Bua people commonly known as the "hobbits":

Morwood, who passed away on July 23 from cancer, made important contributions in research areas ranging from the rock art of Australia’s Kimberly region to the seafaring capabilities of Homo erectus. But he will be best remembered for a discovery he and his colleagues made on the Indonesian island of Flores: the remains of a miniature human species that shared the planet with our own ancestors not so long ago.

...

Science needs shake-ups—findings that break all the rules, force researchers to reconsider what they thought they knew and remind us all that there is still so much to learn. Nine years after the Liang Bua team introduced the world to H. floresiensis, scholarly papers on it continue to fill the pages of scientific journals, presentations on it still attract standing room-only crowds at anthropology conferences, and the public remains enthralled with our hobbit cousin. No doubt Morwood’s discovery will continue to fire imaginations and inspire new inquiries for many more years to come.

Even without the Late Pleistocene skeletal evidence from Liang Bua, the clear demonstration that the human occupation of Flores began in the Early Pleistocene would rank as one of the truly important discoveries in paleoanthropology.

Denisovans and the Middle Paleolithic of India

Sun, 2013-07-21 09:58 -- John Hawks

Sheila Mishra and colleagues have a new paper discussing the antiquity of microblade industries in India, focusing on the site of Mehtakheri in Madhya Pradesh, for which they report new OSL dates on microblade-bearing layers going back some 45,000 years [1]. Microblades are relatively small, thin flakes of stone, generally intended to be hafted onto a handle of wood, bone or other material. These small tools are not useful by themselves; they break readily and only function when supported by some armature. The production of such small thin flakes requires a fairly specialized series of choices in the reduction sequence, and the stone cores from which these microblades were struck are easily recognized by archaeologists.

Figure 11 from Mishra and colleagues (2013)

Figure 11 from Mishra and colleagues (2013), CC-BY. Original caption: Figure 11. D3, F1, M25, J15 and M23 are microblade cores.
J39 is a trimmed nodule. J2 is is a retouched flake on multicoloured chert and M9 is a perforator made on a platform rejuvenation flake. J44, D107, A42 and I41 are hammerstones of various sizes. C26, D26, D78, C3 are broken flakes and M22 and M13 complete flakes. K1 and M2 are from the initial stages of core reduction showing the much larger initial size of the cores. M 2 also retains a part of the crested guiding ridge.
doi:10.1371/journal.pone.0069280.g011

I'm going to use this new paper as an occasion to visit the archaeological record of Late Pleistocene India, stretching across a number of posts. In this one, I'll examine Mishra and colleagues' discussion of the Denisova genome.

Readers following this story will remember that Michael Petraglia and colleagues have, through a series of articles, argued for technological and cultural continuity in southern India from as early as 77,000 years ago up to around 38,000 years ago (for example, reviewed in [2]). This time span stretches across the horizon created by ash from the Toba, Sumatra volcanic eruption, one of the most geologically visible events in the Late Pleistocene, and Petraglia and colleagues have shown this continuity at Jwalapuram in levels both under and above the Toba ash. That finding connects to 15-year-long debate in paleoanthropology about the importance of this volcanic event. By the account of Petraglia and colleagues; the Middle Paleolithic industry of south India has technical similarities to Middle Stone Age industries of Africa, and based on its timing and continuity is likely to have been produced by modern humans.

Meanwhile, Paul Mellars and colleagues have argued in a series of articles that the appearance of modern humans in South Asia was accompanied by the first systematic production of microblades as part of a rather more advanced technical repertoire (for example, [3]). In Mellars and colleagues' view, modern humans in India originated in Africa with a dispersal that occurred sometime after 60,000 years ago. They argue that the microlithic assemblages have clear technical similarities to production of Howieson's Poort toolkits in southern Africa, and suggest that the dispersal carried this cultural information and technical abilities rapidly across southern Asia and ultimately to Australia.

I will investigate both these points of view more fully. As you can see, it is a debate that is fundamentally about the timing of "major dispersal", the importance (or lack of importance) of local technical continuity, and the similarities (or lack of similarities) of South Asian industries with MSA African industries. Both groups have addressed mtDNA evidence for the timing of population growth in South Asia; this evidence is unsatisfactory in one way or another to both.

Why Denisova is important

Neither group has, to date, addressed the relevance of the Denisova genome to the dispersal of humans across South Asia. To my mind, there is a singular point that any hypothesis must accommodate: indigenous Australians and Melanesians have substantial Denisovan ancestry, South and Southeast Asians, and peoples of Java, Sumatra and Borneo have at most a trace of Denisovan ancestry ("How widespread is Denisovan ancestry today?").

We can't easily explain this pattern without multiple waves of population movement into Southeast Asia. The later wave (or waves) of movement must have happened after the initial spread of people who would colonize Australia and Melanesia. This later wave (or waves) must have made up the vast majority of the ancestry of later Southeast Asians, including today's hunter-gatherer peoples of mainland Southeast Asia and the peoples of the Andaman Islands. The source of this later wave must have been from some population that had Neandertal ancestors but did not have Denisovan ancestors.

This is a minimum. If we imagine Denisovans may have lived in China, or in South Asia, then the extent of later waves of movement must have been even greater, coming from even farther away. If we imagine that the Denisovans had lived in South Asia, then the later wave of movement must have followed very soon after 60,000 years ago, given the evidence for early population growth of the ancestors of current South Asian populations [4].

Can we escape from this problem by hypothesizing that the Denisovans only lived in Java, and mixed with the ancestors of aboriginal Australians there? Setting aside the fact that the Denisova genome itself was found more than 5000 kilometers away, we must still deal with the apparent lack of Denisovan ancestry in any of the populations of Indonesia west of the Wallace Line. We must have a second migration, and given the diversity of today's populations, that second migration must long predate the Neolithic population expansions that also characterize the region.

In reality, talking about "waves of migration" is unnecessarily specific. I think every population movement included newcomers interacting with the previous inhabitants. We may be talking about a continual flux of people across southern Asia. In the end, we are restricted by only a single fact: today's degree of Denisovan ancestry appears to be nearly uniformly low or zero everywhere that contacted the Asian mainland during the Late Pleistocene. If that apparent fact turns out to be wrong, we'll have to revisit the rest of these assertions.

Microblades and moderns

Mishra and colleagues [1], demonstrate that the microlithic assemblages in India extend as far back as 45,000 years ago. At first glance, this might seem to agree with the Mellars interpretation, but in an e-mail, Mishra indicated to me that she essentially agrees that the earlier non-microblade tradition is also modern humans, but that this industry does not share close technical links with Arabia or West Asia. They propose that the microblade industries mark a connection between South Africa and South Asia as a result of migration from Africa within the last 60,000 years. (this paragraph reflects updates relative to the original post, 22-07-2013).

By doing so, they create a mystery: Why did technology mark this later period of movement, but not earlier dispersals? If there really are technical and biological ties between Arabia and Nubia ("Jebel Faya and early-stage reduction"), why did these people not spread further, along the coast of southern Asia? And how did modern humans arrive at such an early date in Australia, if they were unable to penetrate India?

To answer these questions, Mishra and colleague propose an archaic population of South Asia that was highly competent and competitive with modern humans. They draw upon the hypothesis that Neandertals replaced modern humans in the Levant after the initial habitations evidenced at Skhul and Qafzeh. This example may show that modern humans were not well suited to certain climatic and ecological challenges before the appearance of the microblade toolkit.

Sharp differences in the stone tool technology of modern humans in the Indian Subcontinent and Southeast Asia exist throughout the Late Pleistocene [19]. This would not be the case if modern humans had reached there from the Indian Subcontinent. Although the evidence is still not conclusive, it appears that modern humans reached Southeast Asia during MIS 5 from a different route and earlier than the Indian Subcontinent. Given the rapidly accumulating evidence for the presence of modern humans in Arabia during MIS 5 [26,27,39,40,41,42,43,44,45,46,47,48], an explanation for their failure to disperse into the Indian Subcontinent at that time, is required. We suggest that the Indian Subcontinent during MIS 5 times was occupied by a population derived from Homo erectus adapted to the Indian environment from Lower Pleistocene times onwards. This population would be “archaic”, and the Narmada hominin would be ancestral or a representative of it. Competition between Indian archaics and modern humans would have been intense since they were adapted to similar environments. Failure of modern humans to disperse into the Indian Subcontinent during MIS 5 was probably due to their failure to successfully compete with the Indian archaics during a period when the climatic conditions were favourable to both. However during the MIS 4 times, when the desert zones of Africa and Arabia were abandoned and more favourable zones in the Middle East such the Levant and Iran were occupied by Neanderthals, modern humans had more success in entering India and a major change in the Indian Palaeolithic record then occurred. The expansion of modern humans into India therefore coincides with the expansion of Neanderthals into the Middle East at the expense of modern humans and into Central Asia possibly at the expense of Denisovans.

In the place of a "southern route" hypothesis for the colonization of Australia, Mishra and colleagues present an alternative: Migration around the northern tier of South Asia, possibly through southern Siberia and China.

The contrast between the technology associated with modern humans in the Indian Subcontinent and Southeast Asia is present right from the earliest presence of modern humans in the two regions thus making it more likely that modern humans reached Southeast Asia from Southern China rather than that the differences emerged after modern humans reached Southeast Asia from India. The variation in the degree of Neanderthal and Denisovan ancestry in present day populations can also be explained by an earlier dispersal of modern humans to SE Asia via China rather than the Indian subcontinent. Denisovan ancestry is significant in Island but not mainland SE Asia [72]. This is explained if populations in Island SE Asia are descended from populations which spread through China when Denisovan populations were still present. Present day Chinese have different and greater amounts of Neanderthal ancestry than populations elsewhere [73]. but lack significant Denisovan ancestry [72]. This could be due to admixture with Neanderthals in Central Asia when modern humans expanded from there into China during MIS 3 times after Denisovians had become extinct.

That seems at first glance like a highly counter-intuitive take on the evidence. The hypothesis: Modern humans first reached Southeast Asia via China, with little or no input from India. Three elements of this hypothesis accord well with the data as they stand:

1. The earliest modern humans now known from China appear to substantially predate the appearance of microblade toolkits in the Indian subcontinent. These include Zhirendong ("Zhirendong puts the chin in China") and plausibly Liujiang. Liujiang has been associated with a minimal date of 68,000 years ago, and arguably is twice that age [5], but remains debatable because of the circumstances of its discovery [6]. In addition to these, there are several sites with teeth or more fragmentary remains that also might represent early modern humans in China, and there are some very early occupation sites in Southeast Asia. I'll review these in a later post.

2. As Mishra and colleagues suggest, the Southeast Asian archaeological record seems to follow a different trajectory than the South Asian record across much of this time period. That is also true of the Indonesian archaeological record of the Late Pleistocene.

3. The lack of Denisovans in South Asia helps to contain the problem of no Denisovan ancestry to Southeast Asia. This is possibly the most minimal scenario. Further, the later immigration of microblade-using peoples into South Asia would provide a source population for further migrations into Southeast Asia and Indonesia that would lack Denisovan ancestry.

Can we avoid South Asia?

I have my doubts. I think Mishra and colleagues are on to something very interesting, but I am not convinced it has to do with the earliest movement of modern humans.

Most important, I am not convinced that the technical similarities among industries were produced by the biological movements of peoples. For example, Howieson's Poort was a localized and short-term industry without compelling technical connections to later peoples of southern Africa. Sure, it is self-evident that the existence of Howieson's Poort shows that its makers were capable of making it. But why would a microblade tradition take hold in India but not other destinations of these people, including within Africa? And why did the technology persist for so long in India when it was far more ephemeral elsewhere? These questions necessitate local ecological and cultural answers. The strength of ecology and culture history in maintaining these industries in India must have outweighed the importance of drift and ecological factors in other regions. But if so, then surely the microblade industries are much more likely instances of convergent technical solutions than lineal cultural relations.

I recognize that this is a general argument against the use of technical similarities as markers of population relationships. It is just as applicable to the similarities of Jebel Faya and the Nubian complex, for example, or to the linking of Indian Middle Paleolithic and MSA African industries proposed by Petraglia and colleagues.

But the evident diversity of the MSA record of Africa, with a rapid invention, local proliferation, and frequent disappearance of such interesting elements, makes it very likely that technical links will appear by random chance with toolkits elsewhere. Let's consider the technical similarities of Mousterian Neandertals -- including ornament production, pigment use, and blade production -- with MSA peoples of southern Africa. Should we believe that these ancient people were linked by an unbroken chain of ideas, so much so that we can infer they were members of a single migrating population?

Probably not.

But we focus too much, perhaps, on similarities. The differences between southern African and Neandertal industries are meaningful, both in terms of ecology and cultural connections. And I think the most interesting part of the current paper is the way Mishra and colleagues reflect upon the technical differences between South and Southeast Asia and China. This means something. The peoples of these regions retained a strong pattern of technical difference in the wake of a time when modern humans had, by some accounts, cruised rapidly across the southern tier of Asia on their way to Australia. These differences may disprove the model and require a more complex scenario of population movement and mixture.

That more complex model may help us make sense of the Denisova genome and its legacy among living peoples. The archaeological evidence is going to help us sort this story, and I am pleased to see it developing.


References

Visit to Georgia

Thu, 2013-07-18 15:39 -- John Hawks

I am visiting Tbilisi this week to examine the Dmanisi skeletal collection and to shoot some footage for my upcoming massive open online course (MOOC), "Human Evolution: Past and Future". This is really a dream visit for me, as I get to see one of the most amazing collections of fossils ever discovered, see the site where new discoveries are still being made, and I'll be sharing those experiences with a huge number of people interested in human origins around the world.

This week I am acclimating myself to a place where it's not only a new language, but they also don't use any of the alphabets I already know. Finding places has sure been a challenge!

Here's a view of the old city from across the river:

Untitled

The city is overlooked up on a mountainside by a late medieval fortress, with cable cars going up:

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Pretty different from my cable car experience in South Africa last week! Here's a view of the Parliament building, on the main square:

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One of the incredible things about paleoanthropology is that there are no limits on where in the world we may find great discoveries and great science being done. Tbilisi has some incredible archaeology going back centuries, right here beneath the foundations of the city:

Untitled

HIstory and prehistory are all around. This weekend we'll be going out into the country to see the oldest place humans have ever been found outside Africa.

Neandertal painted shell pendant

Wed, 2013-07-17 07:28 -- John Hawks

The final paragraph of this new paper by Marco Peresani and colleagues [1] lists all the essential details:

In conclusion, analysis of the Aspa marginata found in Fumane Unit 9 shows that this fossil gastropod was collected by Neandertals, makers of the Discoid industry, at a Miocene or Pliocene fossil outcrop, the closest of which is located more than one hundred kilometers from the site. The shell was smeared with a pure, finely ground, hematite powder, probably mixed with a liquid. It was perhaps perforated and used as a personal ornament before being discarded, lost or intentionally left at Fumane Cave, some 47,6-45,0 cal ky BP. The minimum age of the Fumane unit in which the Aspa marginata was found predates the oldest available dates for the arrival of anatomically modern humans (AMH) in Europe [90] thus supporting the hypothesis that deliberate transport and coloring of exotic objects, and perhaps their use as pendants, was a component of Neandertal cultures [91,92,15]. That the pendant appears well before the presumed first appearance of AMH in Europe [93, but see 90,94] indicates that Neandertals made this art object without the influence of AMH. The use of this shell by Neandertals as a result of contact with immigrant AMH is also contradicted by the absence of this particular taxon of shell at Early Upper Paleolithic sites across Europe [95,96]. The only other Paleolithic occurrence is a specimen found in the Epigravettian horizons of Riparo Tagliente in the Lessini Mountains of NE Italy [97]. Thus, this discovery adds to the ever-increasing evidence that Neandertals had symbolic items as part of their culture. Future discoveries will only add to our appreciation of Neandertals shared capacities with us.

This example of Neandertal ornament production is especially interesting in light of claims about later Upper Paleolithic uses of fossil shells. For example, Magdalenian peoples apparently transported fossil shells from the Eocene deposits of the Paris Basin to Belgium, which has been argued as support for long-distance trade or kinship networks in this later Upper Paleolithic timeframe [2]. Here we are faced with much less evidence: a single shell instead of several.

Of course, that is usually the case with Neandertal-era archaeological sites, much less evidence scattered over a relatively longer time. When we compare these records we should explicitly correct for the differences in preservation and intensity of deposition of materials. The Magdalenian covered as little as 4000 years total, with the greatest density of sites covering only around 2000 years near the end of the Upper Paleolithic. It is interesting to speculate what we might find with a high-density sample of Neandertal material culture well-dated to an equivalent 2000-year timespan.


References

Mathematical thinking

Sat, 2013-07-13 10:15 -- John Hawks

The Kavli Foundation sponsored an interesting conversation among four scientists about whether mathematical concepts are natural or inventions of humans: "What are the origins of math?"

MAX TEGMARK: When different cultures evolve, they aren’t all going to come up with the concepts and words for all the different mathematical structures, but I think they will all come up with some of the most useful concepts. All cultures find it useful to distinguish between one and two, so they can know if they left one kid behind in the forest—ducks are really good at keeping track of how many babies they have swimming after them--whereas studying abstract algebra may not be something important to all cultures.

Photo: Sterkfontein

Fri, 2013-07-12 14:12 -- John Hawks

This morning I went on an awesome visit to Sterkfontein, guided through the subterranean parts of the excavations by site manager Dominic Stratford. What an impressive place! This was a slightly unexpected one for me, happily facilitated by Meredith Johnson of the Leakey Foundation.

Lest anyone think that the "caves" of South Africa are all collapsed and fully open to the air, here's a photo of the tourist area of the Sterkfontein site:

Sterkfontein tourist gallery lighted

You can get tours through this part of the cave from the Sterkfontein visitors' center all day long. This is the easiest of the Cradle sites for people to see while they are here, and the small interpretive museum right at the site is very well done.

Deeper in the cave, Dominic took me through the Jacovec Cavern, which contains what may be the oldest fossil-bearing breccias at the site, and indeed may have produced the oldest hominins in South Africa:

Jacovec colors

This is really a stunning deposit, with the ladder going up, up, up to a fossil-bearing breccia that now comprises the ceiling of the chamber.

Paleoanthropologists who have visited the site before will no doubt remember the bronze statue of Robert Broom, gazing contemplatively at his reconstruction of "Plesianthropus transvaalensis", based on the TM 1511 cranial remains (not, as I said in an earlier draft, the more famous Sts 5 "Mrs. Ples" skull).

Broom statue Mrs. Ples Sterkfontein

Caucasian "news analysis"

Fri, 2013-07-12 11:59 -- John Hawks

Shaila Dewan, an "economics reporter" for the New York Times catches up with anthropology circa 1963: "Has ‘Caucasian’ Lost Its Meaning?".

Susan Glisson, who as the executive director of the William Winter Institute for Racial Reconciliation in Oxford, Miss., regularly witnesses Southerners sorting through their racial vocabulary, said she rarely hears “Caucasian.” “Most of the folks who work in this field know that it’s a completely ridiculous term to assign to whites,” she said. “I think it’s a term of last resort for people who are really uncomfortable talking about race. They use the term that’s going to make them be as distant from it as possible.”

And thus we have come to the end of "all the news that's fit to print". This doesn't even have the usual NYT angle of hipster-acquaintances-of-the-columnist who have decided to adopt an otherwise-odd behavior. Hey, world -- anthropology got it right fifty years ago! You can relax now!

Photos: Drimolen in morning

Wed, 2013-07-10 17:15 -- John Hawks

This morning began early with a drive out to the Cradle of Humankind. Colin Menter and Andy Herries were really kind to allow us to visit their excavation at Drimolen, which is a stunning site with a lot of continuing potential for new discoveries.

Here's a view of the rim of the cave, as it is today:

Drimolen rim

That's just the top, where the light is hitting the rock, the fossil-bearing sediments and breccias are not in the picture.

Here you can see more of the site, with the team already busily at work, excavating there in the shadows:

Drimolen shadows

Drimolen has produced some beautiful published remains of Australopithecus robustus, including most of a cranium (DNH 7), and some published teeth of early Homo. Such a wonderful place, and great to hear the story of the site more fully.

Big data, little data

Wed, 2013-07-10 16:31 -- John Hawks

Jacquelyn Gill is a paleoecologist who writes at her blog, The Contemplative Mammoth. Today she ponders a paradox: at the same time that pollen data are more and more in demand for meta-analyses, positions and funding for primary analysis of pollen have been decreasing: "Is pollen analysis dead? Paleoecology in the era of big data".

Pollen analysis is expensive, time-consuming, and even hazardous (hello, hydrofluoric acid!). I often joke that a week in the field translates to a year in the lab; It can take as much as a year to produce a single pollen diagram from one sediment core. Add to that the time and costs associated with radiocarbon dating (anywhere from $250 to $600 a pop!) and any other analyses to fill out the environmental picture. In the time it takes someone to publish one paper based on pollen data they collected, someone analyzing pollen data can generate several papers. There’s arguably less reward (from a publications perspective) for that single site than there is from a multi-site synthesis. With these in mind, it’s easy to see how it can be more attractive to work with pollen data than to generate it.

Here’s the thing: We need to be generating pollen records. There are major gaps in spatial and temporal coverage even in North America, let alone the rest of the world– South America, Africa, Asia, and Australia have some excellent records but nowhere near the spatial or temporal coverage of Europe and North America.

Meta-analysis of "big data" is sexy, and tests the kinds of theories that make waves in science, but cannot proceed without primary data gathering. In human genetics, many "big data" projects (like the 1000 Genomes Project) are explicitly collaborations among many labs and research groups, so that primary data gathering is integrated with a series of meta-analyses at different scales. And the data are then openly made available to other researchers to do further meta-analysis, or to add their own datasets. That kind of system takes pretty explicit centralization of funding.

In paleoanthropology, we have pretty much the opposite. Meta-analysis is not a funding priority, and primary data-gathering (excavation, description) still can build a very good career. But we sometimes struggle with higher-order hypotheses that can be answered only by open analysis of data from many sites. This is because key data from some places are hidden away, only accessible by a small cadre of researchers.

So there are two ways that different fields have addressed the empirical data gathering crunch: Hide data so that only people generating new data can publish, or centralize data availability so that many people have an incentive to add new data. You can guess which one I think works better...

Photo: Dusk in the Cradle

Sun, 2013-07-07 16:38 -- John Hawks

Action-packed day today as I did some filming with Matt Sponheimer and a great team of scientists doing some field ecology in the Cradle nature reserve. The morning was field collection of plants for testing of mechanical properties and nutritional content; the afternoon I tagged along on a primate-spotting venture with James Loudon and Daryl Codron. We caught up with a wary troop of baboons and witnessed a real fracas between an adult male and some juveniles.

Here's some of the landscape around sunset.

Untitled

Photo: Swartkrans looking out

Sat, 2013-07-06 16:59 -- John Hawks

I'm in South Africa this month doing some work, so I haven't had time to post quite as often as usual. In the meantime, I will share a few photos as I go. Monday I visited Swartkrans Cave with Travis Pickering, who is the lead scientist working there. It was a great visit and I got some incredible footage that will be part of the MOOC.

Here's a photo of the deeper part of the cave, looking out. The tree there at the opening is very much like what Bob Brain reconstructed as the environment at the time the hominin fossils accumulated at the site. Leopards sometimes carried their hominin prey up into such trees, letting bones fall below into the cave where they gathered in several episodes over a million years.

swartkrans-dark-looking-out-2013

Quote: John McPhee on the United States

Thu, 2013-07-04 13:58 -- John Hawks

I was excited yesterday when I saw that John McPhee's Annals of the Former World is finally on Kindle, and is selling for less than 9 dollars. It is a masterful treatment of the geology of North America, from one of the best science writers ever. So I bought it immediately and dived into the first book, Basin and Range this morning. The first chapter has a passage that's appropriate for the Fourth of July, reflecting on the geological and zoological divisions instead of political ones:

The United States: really a quartering of a continent, a drawer in North America. Pull it out and prairie dogs would spill off one side, alligators off the other -- a terrain crisscrossed with geological boundaries, mammalian boundaries, amphibian boundaries: the limits of the world of the river frog, the extent of the Nugget formation, the range of the mountain cougar. The range of the cougar is the cougar's natural state, overlying segments of tens of thousands of other states, a few of them proclaimed a nation. The United States of America, with its capital city on the Atlantic Coastal Plain.

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Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.