Molecular Dynamics

An Introduction to Molecular Dynamics

Order: Reorder
Duration: 4:12
Updated: 29 Jul 2013

A Brief introduction to molecular dynamics. For more similar videos see http://www.youtube.com/user/Thunderf00t.

http://wn.com/An_Introduction_to_Molecular_Dynamics

25. Statistical Foundation for Molecular Dynamics Simulation

Order: Reorder
Duration: 84:06
Updated: 07 Aug 2013

MIT 2.57 Nano-to-Micro Transport Processes, Spring 2012 View the complete course: http://ocw.mit.edu/2-57S12 Instructor: Gang Chen License: Creative Commons ...

http://wn.com/25_Statistical_Foundation_for_Molecular_Dynamics_Simulation

Oil and water separation by molecular dynamics simulation

Order: Reorder
Duration: 1:59
Updated: 23 Jul 2013

Molecular dynamics simulation of oil (pentane, C5H12) and water separation at 300 K temperature and 1 atm pressure. List of my MD simulation videos: http://w...

http://wn.com/Oil_and_water_separation_by_molecular_dynamics_simulation

Project: Molecular dynamics | MIT 6.189 Multicore Programming Primer, IAP 2007

Order: Reorder
Duration: 26:50
Updated: 09 Jun 2013

Project: Molecular dynamics License: Creative Commons BY-NC-SA More information at http://ocw.mit.edu/terms More courses at http://ocw.mit.edu.

http://wn.com/Project_Molecular_dynamics_|_MIT_6189_Multicore_Programming_Primer,_IAP_2007

Molecular Dynamics

Order: Reorder
Duration: 68:58
Updated: 23 May 2013

Molecular Dynamics Emad Tajkhorshid.

http://wn.com/Molecular_Dynamics

Leading the world in molecular dynamics simulation

Order: Reorder
Duration: 4:47
Updated: 24 Jun 2013

Yasuoka Laboratory conducts research on how atoms and molecules move in soft materials, such as fluids and biological systems. To do this, the Lab uses a met...

http://wn.com/Leading_the_world_in_molecular_dynamics_simulation

Prof. Benoit Roux's Seminar on Molecular Dynamics Simulations

Order: Reorder
Duration: 64:48
Updated: 14 Jul 2013

Molecular dynamics simulation of large biological macromolecules have reached the point where they can be used to provide meaningful insight on the function ...

http://wn.com/Prof_Benoit_Roux's_Seminar_on_Molecular_Dynamics_Simulations

Molecular Dynamics Software (NAMD)

Order: Reorder
Duration: 50:13
Updated: 19 Jun 2013

Molecular Dynamics Software (NAMD), including validation Emad Tajkhorshid.

http://wn.com/Molecular_Dynamics_Software_NAMD

Molecular Dynamics Simulation of Water

Order: Reorder
Duration: 2:34
Updated: 24 Jun 2013

MD simulation of water List of my MD simulation videos: http://www.youtube.com/user/mdsimulator.

http://wn.com/Molecular_Dynamics_Simulation_of_Water

Molecular Dynamics on Stapled Peptide - Computational Drug Design

Order: Reorder
Duration: 2:15
Updated: 02 Aug 2013

Probing the α-helical structural stability of stapled p53 peptides using replica exchange molecular dynamics. Zoujun Guo, Udayan Mohanty, Justin Noehre, Tomi...

http://wn.com/Molecular_Dynamics_on_Stapled_Peptide_Computational_Drug_Design

SiO2 Fissure in Molecular Dynamics

Order: Reorder
Duration: 1:41
Updated: 17 Apr 2013

TACC Vis Showcased at SC12 Computation: Ken-ichi Nomura, Priya Vashishta (University of Southern California) Visualization: Aaron Knoll, Joe Insley (Argonne ...

http://wn.com/SiO2_Fissure_in_Molecular_Dynamics

Molecular dynamics simulation of a drug entering into the binding site of a target protein

Order: Reorder
Duration: 1:01
Updated: 24 Jul 2013

Unbiased molecular dynamics simulation of DADME binding to PNP.

http://wn.com/Molecular_dynamics_simulation_of_a_drug_entering_into_the_binding_site_of_a_target_protein

GPUs and Visual Molecular Dynamics (VMD)

Order: Reorder
Duration: 3:28
Updated: 07 Aug 2013

John Stone, Senior Research Programmer at University of Illinois, talks about using GPUs and CUDA for Visual Molecular Dynamics. More information: http://www...

http://wn.com/GPUs_and_Visual_Molecular_Dynamics_VMD

Introduction to Molecular Dynamics

Order: Reorder
Duration: 40:57
Updated: 03 Oct 2013

A PRACE training video tutorial on an introduction to Molecular Dynamics. To download the slides of the video please visit the following PRACE Training Portal webpage: http://www.training.prace-ri.eu/training_material/?tx_pracetmo_pi1[uid]=322

http://wn.com/Introduction_to_Molecular_Dynamics

Water vaporization at the water surface [Molecular Dynamics Simulation]

Order: Reorder
Duration: 2:44
Updated: 02 May 2013

Molecular dynamics (MD) simulation of water vaporization at the water surface. Temperature is 370 K (97C) and MD speed is 0.6 ps/second. Movie was drawn with...

http://wn.com/Water_vaporization_at_the_water_surface_Molecular_Dynamics_Simulation_

ReaxFF Tutorial 1: easy set up and analysis of reactive molecular dynamics with GUI

Order: Reorder
Duration: 3:59
Updated: 24 May 2013

Tutorial on using the GUI to set up and analyze a ReaxFF calculation: http://www.scm.com/ReaxFF. In this example, the combustion of methane in oxygen is mode...

http://wn.com/ReaxFF_Tutorial_1_easy_set_up_and_analysis_of_reactive_molecular_dynamics_with_GUI

Molecular Dynamics, The Shovel for Data Mining Neutron Scattering Data

Order: Reorder
Duration: 40:09
Updated: 06 Aug 2013

Some of the uses of neutron scattering experiments of disordered, biologically relevant systems as a test for molecular dynamics simulations. Also covered ar...

http://wn.com/Molecular_Dynamics,_The_Shovel_for_Data_Mining_Neutron_Scattering_Data

Molecular dynamics of salt dissolving in water

Order: Reorder
Duration: 2:29
Updated: 29 Jul 2013

www.chem.ucl.ac.uk/ice: Molecular dynamics simulation of salt dissolving in water. The chlorine ions are shown in yellow, sodium in blue. The large chlorine ...

http://wn.com/Molecular_dynamics_of_salt_dissolving_in_water

Path Integral Ab Initio Molecular Dynamics

Order: Reorder
Duration: 1:20
Updated: 08 Aug 2013

Feynman Path Integral Ab Initio Molecular Dynamics sampling of the umbrella sampling window corresponding to the product of the double proton transfer in the...

http://wn.com/Path_Integral_Ab_Initio_Molecular_Dynamics

Molecular dynamics of the catalytic and translocation cycle of RNA polymerase

Order: Reorder
Duration: 0:18
Updated: 13 Jun 2012

Additional file 2 Kireeva et al. BMC Biophysics 2012, 5:11 http://www.biomedcentral.com/2046-1682/5/11/abstract Maria L Kireeva, Kristopher Opron, Steve A Se...

http://wn.com/Molecular_dynamics_of_the_catalytic_and_translocation_cycle_of_RNA_polymerase

Leonardo Guidoni, Ab initio Molecular Dynamics in Natural and Artificial... - September 27, 2013

Order: Reorder
Duration: 19:04
Updated: 28 Sep 2013

Avogadro Colloquia - second edition Challenges for theoretical and computational chemistry in Horizon 2020 Leonardo Guidoni Ab initio Molecular Dynamics in Natural and Artificial Photosynthesis September 27, 2013 Sala Azzurra - Palazzo della Carovana ORGANIZING COMMITTEE Vincenzo Barone, Scuola Normale Superiore Chiara Cappelli, CECAM-IT-SNS Node Gianfranco Pacchioni, Università di Milano Bicocca Francesco Zerbetto, Università di Bologna INTRODUCTION The Avogadro Colloquia, created by the SCI in 2012, have the scope to create a discussion forum on areas of chemistry of growing interest. This second edition is dedicated to the "Challenges for theoretical and computational chemistry in Horizon2020" and it is promoted by the Italian Chemical Society (SCI) and organized in collaboration with the Scuola Normale Superiore di Pisa and the CECAM-IT-SNS node and with the support of the Theoretical and Computational Chemistry Division of the SCI. This year the Avogadro Colloquium is also the occasion to assign the Roetti Medal and the Scrocco Prize to young researchers who have particularly contributed to the development of theoretical and computational chemistry.

http://wn.com/Leonardo_Guidoni,_Ab_initio_Molecular_Dynamics_in_Natural_and_Artificial_September_27,_2013

Lec 13 | MIT 3.320 Atomistic Computer Modeling of Materials

Order: Reorder
Duration: 83:31
Updated: 29 Apr 2008

Molecular Dynamics I View the complete course at: http://ocw.mit.edu/3-320S05 License: Creative Commons BY-NC-SA More information at http://ocw.mit.edu/terms More courses at http://ocw.mit.edu

http://wn.com/Lec_13_|_MIT_3320_Atomistic_Computer_Modeling_of_Materials

Molecular dynamics of a protein with cysteine coordinated Zn.

Order: Reorder
Duration: 0:41
Updated: 15 Apr 2013

Molecular dynamics simulation of a protein/zinc complex. This was performed with the AMBER forcefield using the GROMACS suite. Amber allows for the use of de...

http://wn.com/Molecular_dynamics_of_a_protein_with_cysteine_coordinated_Zn