5:14
Understand PubChem to search efficiently
by the Chemistry and Chemical Engineering Library, UC Berkeley...
published: 21 May 2010
author: jeffloo10
Understand PubChem to search efficiently
by the Chemistry and Chemical Engineering Library, UC Berkeley
3:30
Search PubChem
Table of contents [0:03] Basic search [1:10] Advanced search options [1:52] Combine search...
published: 05 Jun 2010
author: jeffloo10
Search PubChem
Table of contents [0:03] Basic search [1:10] Advanced search options [1:52] Combine search terms with AND, OR, and NOT operators [2:35] Re-run previous searches (History function) [3:06] Summary by the Chemistry and Chemical Engineering Library, UC Berkeley
4:13
PubChem Online Tutorial
Camtasia tutorial on using PubChem....
published: 03 Feb 2012
author: RensselaerLibraries
PubChem Online Tutorial
Camtasia tutorial on using PubChem.
4:47
Search for and view bioactivity data in PubChem
Table of contents [0:03] Search for bioactivity data [1:32] Find bioactivity data for a pa...
published: 18 Jul 2010
author: jeffloo10
Search for and view bioactivity data in PubChem
Table of contents [0:03] Search for bioactivity data [1:32] Find bioactivity data for a particular small molecule [1:49] View, plot, and filter bioactivity data [4:34] Summary by the Chemistry and Chemical Engineering Library, UC Berkeley
3:04
View 3D chemical structures in PubChem
Table of contents [0:03] View 3D chemical structures [1:37] Visualize alignment to a refer...
published: 30 Jun 2010
author: jeffloo10
View 3D chemical structures in PubChem
Table of contents [0:03] View 3D chemical structures [1:37] Visualize alignment to a reference chemical structure [2:53] Summary by the Chemistry and Chemical Engineering Library, UC Berkeley
3:20
Understand PubChem search results
Table of contents [0:10] Change display and sort [0:33] View subsets of results [0:59] Fin...
published: 06 Jun 2010
author: jeffloo10
Understand PubChem search results
Table of contents [0:10] Change display and sort [0:33] View subsets of results [0:59] Find links to other data and related searches [1:55] Anatomy of a PubChem record [3:09] Summary by the Chemistry and Chemical Engineering Library, UC Berkeley
3:03
Group chemical compounds by structural similarity with PubChem structure clustering
Table of contents [0:04] Introduction to the structure clustering tool [0:34] Demonstratio...
published: 30 Jun 2010
author: jeffloo10
Group chemical compounds by structural similarity with PubChem structure clustering
Table of contents [0:04] Introduction to the structure clustering tool [0:34] Demonstration of structure clustering [2:46] Summary by the Chemistry and Chemical Engineering Library, UC Berkeley
7:06
Search and download chemical structures in PubChem
Table of contents [0:03] Find the chemical structure search tool [0:31] Name/Text search [...
published: 30 Jun 2010
author: jeffloo10
Search and download chemical structures in PubChem
Table of contents [0:03] Find the chemical structure search tool [0:31] Name/Text search [0:42] Identity search [1:35] Similarity search [2:17] Substructure search [2:52] Superstructure search [3:25] Molecular formula search [3:36] Search options and filters [4:09] Example similarity search [5:54] Save structure searches [6:12] Run a saved search [6:26] Download chemical structures [6:52] Summary by the Chemistry and Chemical Engineering Library, UC Berkeley
6:11
Conduct a structure-activity analysis in PubChem
Table of contents [0:03] Use the structure-activity analysis tool [1:15] Understand bioass...
published: 18 Jul 2010
author: jeffloo10
Conduct a structure-activity analysis in PubChem
Table of contents [0:03] Use the structure-activity analysis tool [1:15] Understand bioassay results and modify the structure-activity analysis [3:35] Tips for bioactivity analysis heat maps [4:29] Conduct structure-activity analysis from PubChem Compound or Substance [5:45] Summary by the Chemistry and Chemical Engineering Library, UC Berkeley
5:42
Simplify PubChem search results
Table of contents [0:03] Results don't seem relevant? [0:57] Filter results (show reco...
published: 08 Jun 2010
author: jeffloo10
Simplify PubChem search results
Table of contents [0:03] Results don't seem relevant? [0:57] Filter results (show records that meet a particular criteria [1:43] Conduct index searching [2:53] Efficient index searching [4:32] Combine previous searches with AND, OR, and NOT operators [5:16] Summary by the Chemistry and Chemical Engineering Library, UC Berkeley
3:26
Save PubChem searches
Table of contents [0:03] Review your previous searches [0:27] Save PubChem searches [1:32]...
published: 10 Jun 2010
author: jeffloo10
Save PubChem searches
Table of contents [0:03] Review your previous searches [0:27] Save PubChem searches [1:32] Save just a few records [2:42] Summary by the Chemistry and Chemical Engineering Library, UC Berkeley
1:23
Getting started with PubChem tools
Table of contents [0:03] Introduction to PubChem tools [0:39] Find tools [1:04] Summary by...
published: 30 Jun 2010
author: jeffloo10
Getting started with PubChem tools
Table of contents [0:03] Introduction to PubChem tools [0:39] Find tools [1:04] Summary by the Chemistry and Chemical Engineering Library, UC Berkeley
1:13
GTM 3D for PubChem 50k data set
...
published: 08 Oct 2009
author: yyalli
GTM 3D for PubChem 50k data set
12:08
Mining promiscuous chemotypes in PubChem - Oleg Ursu (Uni. of New Mexico)
Promiscuous compounds are associated with frequent hitters in HTS assays. We developed a m...
published: 16 Jan 2012
author: chemaxon
Mining promiscuous chemotypes in PubChem - Oleg Ursu (Uni. of New Mexico)
Promiscuous compounds are associated with frequent hitters in HTS assays. We developed a method for rapid and automatic identification of chemotypes associated with frequent hitters based on matching molecular pairs concept. Using PubChem bioassay database we identified frequent hitters and "probable" chemotypes responsible for compound promiscuity. A scoring scheme was designed from distribution of biological activities across assays, substances, and molecular matching pairs, allowing for ranking of "most" promiscuous chemotypes. Identified promiscuous chemotypes can used as a filter for prioritization of HTS hits, and compound library design.
8:55
Crowdsourced Chemistry Why Online Chemistry Data Needs Your Help
This is the Ignite talk that I gave at ScienceOnline2010 #sci010 in the Research Triangle ...
published: 17 Jan 2010
author: ChemSpiderMan
Crowdsourced Chemistry Why Online Chemistry Data Needs Your Help
This is the Ignite talk that I gave at ScienceOnline2010 #sci010 in the Research Triangle Park in North Carolina on January 16th 2010. This was supposed to be a 5 minute talk highlighting the quality of chemistry data on the internet. Ok, it was a little tongue in cheek because it was an after dinner talk and late at night but the data are real, the problem is real and the need for data curation of chemistry data online is real. On ChemSpider we have provided a platform to deposit and curate data. Other videos will show that in the future.
1:12
Convert chemical structure representations from one format to another in PubChem
Table of contents [0:03] Convert structures [0:14] Example use of structure standardizatio...
published: 30 Jun 2010
author: jeffloo10
Convert chemical structure representations from one format to another in PubChem
Table of contents [0:03] Convert structures [0:14] Example use of structure standardization tool [1:05] Summary by the Chemistry and Chemical Engineering Library, UC Berkeley
10:11
PubChemを利用して化学物質やアッセイの結果を調べる
PubChemはNCBIが提供するデータベ...
published: 26 Mar 2012
author: togotv
PubChemを利用して化学物質やアッセイの結果を調べる
PubChemはNCBIが提供するデータベースです。 アッセイの結果を収録したPubChem BioAssay、化学物質の情報を収録したPubChem CompoundおよびPubChem Substanceの3つから構成されます。 今回は、PubChem BioAssayを利用してアッセイの結果を調べる方法と、PubChem Compoundを利用して化学物質の情報を調べる方法を解説しています。 本家はこちらtogotv.dbcls.jp
5:31
MMDS: Searching Tutorial (iPad)
Searching by structure using the Mobile Molecular DataSheet. How to setup the built-in web...
published: 04 Jan 2011
author: aclarkxyz
MMDS: Searching Tutorial (iPad)
Searching by structure using the Mobile Molecular DataSheet. How to setup the built-in webservices client and search against PubChem or ChEBI. How to copy a SMILES string to the clipboard and search ChemSpider, and import structures back into MMDS.
3:56
Model Tools
Instructions for using the virtual molecular model kit to display molecular surfaces, mole...
published: 20 Nov 2011
author: JmolVMK
Model Tools
Instructions for using the virtual molecular model kit to display molecular surfaces, molecular orbitals, dipole moments, animations, models of inorganic compounds.
6:53
Power of The Force NeoCube Alpha Nanotechnology Cool Science Visualizer Making Math Fun
Official Neocube Here www.youtube.com Feel The Power of The Force NEW & HOT!: t.co GOT...
published: 16 Jun 2011
author: SBARTSTV
Power of The Force NeoCube Alpha Nanotechnology Cool Science Visualizer Making Math Fun
Official Neocube Here www.youtube.com Feel The Power of The Force NEW & HOT!: t.co GOT KLOUT? PLEASE +K ME HERE t.co I'm influential about: academy awards, iphone, and youtube t.co @KLOUT www.youtube.com MAGNETS RULE THE EARTH MAGNETIC POWER WILL GIVE YOU FREE POWER FOREVER C60 wave--particle duality NeoCube Alpha Nanotechnology Science Visualizer Biotechnology Geometry Geometric Genius Gadget buckyball bucky ball Buckminsterfullerene CAS number 99685-96-8 PubChem 123591 ChemSpider 110185 Jmol-3D images THIS MAKES SCIENCE FUN!! ITS ABOUT INNOVATING AND CREATING NOT TAKING TESTS AND JUST MEMORIZING. ITS ABOUT MAKING THE FUTURE AND CREATING NEW VISUAL METHODOLOGIES AND PARADIGMS
3:01
VMK The Model Tools Templates
A 3-minute lesson about building virtual molecular models of inorganic and organometallic ...
published: 20 Nov 2011
author: JmolVMK
VMK The Model Tools Templates
A 3-minute lesson about building virtual molecular models of inorganic and organometallic compounds.
5:14
AKA-The Users' Guide
This tutorial describes AKA's use of chemical identifiers to locate information about ...
published: 20 Nov 2011
author: JmolVMK
AKA-The Users' Guide
This tutorial describes AKA's use of chemical identifiers to locate information about chemical compounds.