Look up Indigenous in Wiktionary, the free dictionary.

In biogeography, a species is defined as native (or indigenous) to a given region or ecosystem if its presence in that region is the result of only natural processes, with no human intervention. Every natural organism (as opposed to a domesticated organism) has its own natural range of distribution in which it is regarded as native. Outside this native range, a species may be introduced by human activity; it is then referred to as an introduced species within the regions where it was anthropogenically introduced.

An indigenous species is not necessarily endemic. In biology and ecology, endemic means exclusively native to the biota of a specific place. An indigenous species may occur in areas other than the one under consideration.

The terms endemic and indigenous do not imply that an organism necessarily originated or evolved where it is found.

See also[link]

• Endemism
• Alien (biology)
• Invasive species
• Native plant

References[link]

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External links[link]

Indigenous, Aliens and Invasives Envirofacts

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Look up indigenous in Wiktionary, the free dictionary.

Indigenous means: belonging to a certain place. Indigenous may refer to:

In Ecology and Geography

• Indigenous resources, resources which exist within local geography, that are not imported
• Indigenous species are those established in a given region, having originated there, or been long settled without human intervention
• Indigenous (horse), Hong Kong racehorse

In Demography and Anthropology

Indigenous peoples,the original peoples of a region

• Indigenous peoples of Africa
• Indigenous peoples of the Americas
  • Indigenous peoples in Brazil
  • Indigenous peoples in Colombia
  • Indigenous peoples in Mexico
  • Indigenous peoples in Peru
  • Indigenous peoples in Canada
  • Indigenous peoples in the United States
  • Indigenous peoples of the Pacific Northwest Coast
• Indigenous peoples of Australia
• Indigenous peoples of Europe
• Indigenous peoples of Siberia

Cultural and other considerations:

• Indigenous Australian languages
• Indigenous (band), an American blues-rock band
• Indigenous church mission theory
• Indigenous intellectual property, a legal term identifying the right to claim knowledge within their culture
• Indigenous knowledge, an alternative term for local or traditional knowledge from particular indigenous peoples
• Indigenous land rights
• Indigenous language, a language that is native to a region and spoken by indigenous peoples but has been reduced to a minority language
• Indigenous languages of Alaska
• Indigenous languages of the Americas
• Indigenous languages of Mesoamerica
• Indigenous languages of Mexico
• Indigenous religion, or folk religion
• Indigenous religions in Brazil
• Indigenous rights, those rights that exist in recognition of the indigenous peoples
• Indigenous technology, technologies employed by the native inhabitants of a country or place as opposed to imported or adopted
• Indigenous development, efforts to support progress for Indigenous populations.

See also[link]

• All pages that start with indigenous
• Indigenous peoples (disambiguation)

This disambiguation page lists articles associated with the same title. If an internal link led you here, you may wish to change the link to point directly to the intended article.

Ecology

The scientific discipline of ecology addresses the full scale of life, from tiny bacteria to processes that span the entire planet. Ecologists study many diverse and complex relations among species, such as predation and pollination. The diversity of life is organized into different habitats, from terrestrial (middle) to aquatic ecosystems.

Ecology (from Greek: οἶκος, "house"; -λογία, "study of") is the scientific study of the relations that living organisms have with respect to each other and their natural environment. Variables of interest to ecologists include the composition, distribution, amount (biomass), number, and changing states of organisms within and among ecosystems. Ecosystems are hierarchical systems that are organized into a graded series of regularly interacting and semi-independent parts (e.g., species) that aggregate into higher orders of complex integrated wholes (e.g., communities). Ecosystems are sustained by the biodiversity within them. Biodiversity is the full-scale of life and its processes, including genes, species and ecosystems forming lineages that integrate into a complex and regenerative spatial arrangement of types, forms, and interactions. Ecosystems create biophysical feedback mechanisms between living (biotic) and nonliving (abiotic) components of the planet. These feedback loops regulate and sustain local communities, continental climate systems, and global biogeochemical cycles.

Ecology is an interdisciplinary branch of biology, the study of life. The word "ecology" ("Ökologie") was coined in 1866 by the German scientist Ernst Haeckel (1834–1919). Ancient philosophers of Greece, including Hippocrates and Aristotle, were among the earliest to record observations and notes on the natural history of plants and animals. Modern ecology branched out of natural history and matured into a more rigorous science in the late 19th century. Charles Darwin's evolutionary treatise including the concept of adaptation, as it was introduced in 1859, is a pivotal cornerstone in modern ecological theory. Ecology is not synonymous with environment, environmentalism, natural history or environmental science. It is closely related to physiology, evolutionary biology, genetics and ethology. An understanding of how biodiversity affects ecological function is an important focus area in ecological studies. Ecologists seek to explain:

• Life processes and adaptations
• Distribution and abundance of organisms
• The movement of materials and energy through living communities
• The successional development of ecosystems, and
• The abundance and distribution of biodiversity in context of the environment.

Ecology is a human science as well. There are many practical applications of ecology in conservation biology, wetland management, natural resource management (agriculture, forestry, fisheries), city planning (urban ecology), community health, economics, basic and applied science and human social interaction (human ecology). Ecosystems sustain every life-supporting function on the planet, including climate regulation, water filtration, soil formation (pedogenesis), food, fibers, medicines, erosion control, and many other natural features of scientific, historical or spiritual value.^[1][2][3]

Integrative levels, scope, and scale of organization[link]

Ecosystems regenerate after a disturbance such as fire, forming mosaics of different age groups structured across a landscape. Pictured are different seral stages in forested ecosystems starting from pioneers colonizing a disturbed site and maturing in successional stages leading to old-growth forests.

The scope of ecology covers a wide array of interacting levels of organization spanning micro-level (e.g., cells) to planetary scale (e.g., ecosphere) phenomena. Ecosystems, for example, contain populations of individuals that aggregate into distinct ecological communities. It can take thousands of years for ecological processes to mature through and until the final successional stages of a forest. The area of an ecosystem can vary greatly from tiny to vast. A single tree is of little consequence to the classification of a forest ecosystem, but critically relevant to organisms living in and on it.^[4] Several generations of an aphid population can exist over the lifespan of a single leaf. Each of those aphids, in turn, support diverse bacterial communities.^[5] The nature of connections in ecological communities cannot be explained by knowing the details of each species in isolation, because the emergent pattern is neither revealed nor predicted until the ecosystem is studied as an integrated whole. Some ecological principles, however, do exhibit collective properties where the sum of the components explain the properties of the whole, such as birth rates of a population being equal to the sum of individual births over a designated time frame.^[6]

Hierarchical ecology[link]

The scale of ecological dynamics can operate like a closed island with respect to local site variables, such as aphids migrating on a tree, while at the same time remain open with regard to broader scale influences, such as atmosphere or climate. Hence, ecologists have devised means of hierarchically classifying ecosystems by analyzing data collected from finer scale units, such as vegetation associations, climate, and soil types, and integrate this information to identify larger emergent patterns of uniform organization and processes that operate on local to regional, landscape, and chronological scales.

To structure the study of ecology into a manageable framework of understanding, the biological world is conceptually organized as a nested hierarchy of organization, ranging in scale from genes, to cells, to tissues, to organs, to organisms, to species and up to the level of the biosphere.^[8] Together these hierarchical scales of life form a panarchy^[9][10] and they exhibit non-linear behaviours; "nonlinearity refers to the fact that effect and cause are disproportionate, so that small changes in critical variables, such as the numbers of nitrogen fixers, can lead to disproportionate, perhaps irreversible, changes in the system properties."^[11]:14

Biodiversity[link]

Biodiversity (an abbreviation of biological diversity) describes the diversity of life from genes to ecosystems and spans every level of biological organization. Biodiversity means different things to different people and there are many ways to index, measure, characterize, and represent its complex organization.^[13][14] Biodiversity includes species diversity, ecosystem diversity, genetic diversity and the complex processes operating at and among these respective levels.^[14][15][16] Biodiversity plays an important role in ecological health as much as it does for human health.^[17][18] Preventing or prioritizing species extinctions is one way to preserve biodiversity, but populations, the genetic diversity within them and ecological processes, such as migration, are being threatened on global scales and disappearing rapidly as well. Conservation priorities and management techniques require different approaches and considerations to address the full ecological scope of biodiversity. Populations and species migration, for example, are more sensitive indicators of ecosystem services that sustain and contribute natural capital toward the well-being of humanity.^{[19][20][21][22]} An understanding of biodiversity has practical application for ecosystem-based conservation planners as they make ecologically responsible decisions in management recommendations to consultant firms, governments and industry.^[23]

Habitat[link]

The habitat of a species describes the environment over which a species is known to occur and the type of community that is formed as a result.^[24] More specifically, "habitats can be defined as regions in environmental space that are composed of multiple dimensions, each representing a biotic or abiotic environmental variable; that is, any component or characteristic of the environment related directly (e.g. forage biomass and quality) or indirectly (e.g. elevation) to the use of a location by the animal."^[25]:745 For example, the habitat might refer to an aquatic or terrestrial environment that can be further categorized as montane or alpine ecosystems. Habitat shifts provide important evidence of competition in nature where one population changes relative to the habitats that most other individuals of the species occupy. One population of a species of tropical lizards (Tropidurus hispidus), for example, has a flattened body relative to the main populations that live in open savanna. The population that lives in an isolated rock outcrop hides in crevasses where its flattened body may improve its performance. Habitat shifts also occur in the developmental life history of amphibians and many insects that transition from aquatic to terrestrial habitats. Biotope and habitat are sometimes used interchangeably, but the former applies to a communities environment, whereas the latter applies to a species' environment.^[24][26][27]

Biodiversity of a coral reef. Corals adapt and modify their environment by forming calcium carbonate skeletons that provide growing conditions for future generations and form habitat for many other species.^[28]

Niche[link]

Termite mounds with varied heights of chimneys regulate gas exchange, temperature and other environmental parameters that are needed to sustain the internal physiology of the entire colony.^[29][30]

There are many definitions of the niche dating back to 1917,^[31] but G. Evelyn Hutchinson made conceptual advances in 1957^[32][33] and introduced a widely accepted definition: "the set of biotic and abiotic conditions which a species is able to persist and maintain stable population sizes."^[31]:519 The ecological niche is a central concept in the ecology of organisms and is sub-divided into the fundamental and the realized niche. The fundamental niche is the set of environmental conditions under which a species is able to persist. The realized niche is the set of environmental plus ecological conditions under which a species persists.^[31][33][34] The Hutchisonian niche is defined more technically as an "Euclidean hyperspace whose dimensions are defined as environmental variables and whose size is a function of the number of values that the environmental values may assume for which an organism has positive fitness."^[35]:71

Biogeographical patterns and range distributions are explained or predicted through knowledge and understanding of a species traits and niche requirements.^[36] Species have functional traits that are uniquely adapted to the ecological niche. A trait is a measurable property, phenotype, or characteristic of an organism that influences its performance. Genes play an important role in the development and expression of traits.^[37] Resident species evolve traits that are fitted to their local environment. This tends to afford them a competitive advantage and discourages similarly adapted species from having an overlapping geographic range. The competitive exclusion principle suggests that two species cannot coexist indefinitely by living off the same limiting resource. When similarly adapted species are found to overlap geographically, closer inspection reveals subtle ecological differences in their habitat or dietary requirements.^[38] Some models and empirical studies, however, suggest that disturbances can stabilize the coevolution and shared niche occupancy of similar species inhabiting species rich communities.^[39] The habitat plus the niche is called the ecotope, which is defined as the full range of environmental and biological variables affecting an entire species.^[24]

Niche construction[link]

Organisms are subject to environmental pressures, but they are also modifiers of their habitats. The regulatory feedback between organisms and their environment can modify conditions from local (e.g., a beaver pond) to global scales (e.g., Gaia), over time and even after death, such as decaying logs or silica skeleton deposits from marine organisms.^[40] The process and concept of ecosystem engineering has also been called niche construction. Ecosystem engineers are defined as: "...organisms that directly or indirectly modulate the availability of resources to other species, by causing physical state changes in biotic or abiotic materials. In so doing they modify, maintain and create habitats."^[41]:373

The ecosystem engineering concept has stimulated a new appreciation for the degree of influence that organisms have on the ecosystem and evolutionary process. The terms niche construction are more often used in reference to the under appreciated feedback mechanism of natural selection imparting forces on the abiotic niche.^[29][42] An example of natural selection through ecosystem engineering occurs in the nests of social insects, including ants, bees, wasps, and termites. There is an emergent homeostasis or homeorhesis in the structure of the nest that regulates, maintains and defends the physiology of the entire colony. Termite mounds, for example, maintain a constant internal temperature through the design of air-conditioning chimneys. The structure of the nests themselves are subject to the forces of natural selection. Moreover, the nest can survive over successive generations, which means that ancestors inherit both genetic material and a legacy niche that was constructed before their time.^{[6][29][30][43]}

Biome[link]

Biomes are larger units of organization that categorize regions of the Earth's ecosystems mainly according to the structure and composition of vegetation.^[44] Different researchers have applied different methods to define continental boundaries of biomes dominated by different functional types of vegetative communities that are limited in distribution by climate, precipitation, weather and other environmental variables. Examples of biome names include: tropical rainforest, temperate broadleaf and mixed forests, temperate deciduous forest, taiga, tundra, hot desert, and polar desert.^[45] Other researchers have recently started to categorize other types of biomes, such as the human and oceanic microbiomes. To a microbe, the human body is a habitat and a landscape.^[46] The microbiome has been largely discovered through advances in molecular genetics that have revealed a hidden richness of microbial diversity on the planet. The oceanic microbiome plays a significant role in the ecological biogeochemistry of the planet's oceans.^[47]

Biosphere[link]

Ecological theory has been used to explain self-emergent regulatory phenomena at the planetary scale. The largest scale of ecological organization is the biosphere: the total sum of ecosystems on the planet. Ecological relationships regulate the flux of energy, nutrients, and climate all the way up to the planetary scale. For example, the dynamic history of the planetary CO₂ and O₂ composition of the atmosphere has been largely determined by the biogenic flux of gases coming from respiration and photosynthesis, with levels fluctuating over time and in relation to the ecology and evolution of plants and animals.^[48] When sub-component parts are organized into a whole there are oftentimes emergent properties that describe the nature of the system. The Gaia hypothesis is an example of holism applied in ecological theory.^[49] The ecology of the planet acts as a single regulatory or holistic unit called Gaia. The Gaia hypothesis states that there is an emergent feedback loop generated by the metabolism of living organisms that maintains the temperature of the Earth and atmospheric conditions within a narrow self-regulating range of tolerance.^[50]

Population ecology[link]

The population is the unit of analysis in population ecology. A population consists of individuals of the same species that live, interact and migrate through the same niche and habitat.^[51] A primary law of population ecology is the Malthusian growth model.^[52] This law states that:

"...a population will grow (or decline) exponentially as long as the environment experienced by all individuals in the population remains constant."^[52]:18

This Malthusian premise provides the basis for formulating predictive theories and tests that follow. Simplified population models usually start with four variables including death, birth, immigration, and emigration. Mathematical models are used to calculate changes in population demographics using a null model. A null model is used as a null hypothesis for statistical testing. The null hypothesis states that random processes create observed patterns. Alternatively the patterns differ significantly from the random model and require further explanation. Models can be mathematically complex where "...several competing hypotheses are simultaneously confronted with the data."^[53] An example of an introductory population model describes a closed population, such as on an island, where immigration and emigration does not take place. In these island models the rate of population change is described by:

Failed to parse (Missing texvc executable; please see math/README to configure.): \frac{dN}{dT} = B - D = bN - dN = (b - d)N = rN,

where N is the total number of individuals in the population, B is the number of births, D is the number of deaths, b and d are the per capita rates of birth and death respectively, and r is the per capita rate of population change. This formula can be read out as the rate of change in the population (dN/dT) is equal to births minus deaths (B – D).^[52][54]

Using these modelling techniques, Malthus' population principle of growth was later transformed into a model known as the logistic equation:

Failed to parse (Missing texvc executable; please see math/README to configure.): \frac{dN}{dT} = aN\left(1-\frac{N}{K}\right),

where N is the number of individuals measured as biomass density, a is the maximum per-capita rate of change, and K is the carrying capacity of the population. The formula can be read as follows: the rate of change in the population (dN/dT) is equal to growth (aN) that is limited by carrying capacity (1 – N/K). The discipline of population ecology builds upon these introductory models to further understand demographic processes in real study populations and conduct statistical tests. The field of population ecology often uses data on life history and matrix algebra to develop projection matrices on fecundity and survivorship. This information is used for managing wildlife stocks and setting harvest quotas.^[54][55]

Metapopulations and migration[link]

Populations are also studied and modeled according to the metapopulation concept. The metapopulation concept was introduced in 1969:^[56] "as a population of populations which go extinct locally and recolonize."^[57]:105 Metapopulation ecology is another statistical approach that is often used in conservation research.^[58] Metapopulation research simplifies the landscape into patches of varying levels of quality.^[59] Metapopulations are linked by the migratory behaviours of organisms. Animal migration is set apart from other kinds of movement because it involves the seasonal departure and return of individuals from one habitat to another.^[60] Migration is also a population level phenomenon, such as the migration routes followed by plants as they occupied northern post-glacial environments. Plant ecologists rely on pollen records that accumulate and stratify in wetlands to reconstruct the timing of plant migration and dispersal relative to historic and contemporary climates. These migration routes involved an expansion of the range as plant populations expanded from one area to another. There is a larger taxonomy of movement, such as commuting, foraging, territorial behaviour, stasis, and ranging. Dispersal is usually distinguished from migration because it involves the one way permanent movement of individuals from their birth population into another population.^[61][62]

In metapopulation terminology there are emigrants (individuals that leave a patch), immigrants (individuals that move into a patch) and sites are classed either as sources or sinks. A site is a generic term that refers to places where ecologists sample populations, such as ponds or defined sampling areas in a forest. Source patches are productive sites that generate a seasonal supply of juveniles that migrate to other patch locations. Sink patches are unproductive sites that only receive migrants and will go extinct unless rescued by an adjacent source patch or environmental conditions become more favorable. Metapopulation models examine patch dynamics over time to answer questions about spatial and demographic ecology. The ecology of metapopulations is a dynamic process of extinction and colonization. Small patches of lower quality (i.e., sinks) are maintained or rescued by a seasonal influx of new immigrants. A dynamic metapopulation structure evolves from year to year, where some patches are sinks in dry years and become sources when conditions are more favorable. Ecologists use a mixture of computer models and field studies to explain metapopulation structure.^[63][64]

Community ecology[link]

Interspecific interactions such as predation are a key aspect of community ecology.

Community ecology is the study of the interactions among a collection of interdependent species that cohabitate the same geographic area. An example of a study in community ecology might measure primary production in a wetland in relation to decomposition and consumption rates. This requires an understanding of the community connections between plants (i.e., primary producers) and the decomposers (e.g., fungi and bacteria).^[66] or the analysis of predator-prey dynamics affecting amphibian biomass.^[67] Food webs and trophic levels are two widely employed conceptual models used to explain the linkages among species.^[68][69]

Ecosystem ecology[link]

The concept of the ecosystem was fully synthesized in 1935 to describe habitats within biomes that form an integrated whole and a dynamically responsive system having both physical and biological complexes. However, the underlying concept can be traced back to 1864 in the published work of George Perkins Marsh ("Man and Nature").^[71][72] Within an ecosystem there are inseparable ties that link organisms to the physical and biological components of their environment to which they are adapted.^[70] Ecosystems are complex adaptive systems where the interaction of life processes form self-organizing patterns across different scales of time and space.^[73] terrestrial, freshwater, atmospheric, and marine ecosystems very broadly cover the major types. Differences stem from the nature of the unique physical environments that shapes the biodiversity within each. A more recent addition to ecosystem ecology are the novel technoecosystems of the anthropocene.^[6]

Food webs[link]

A food web is the archetypal ecological network. Plants capture and convert solar energy into the biomolecular bonds of simple sugars during photosynthesis. This food energy is transferred through a series of organisms starting with those that feed on plants and are themselves consumed. The simplified linear feeding pathways that move from a basal trophic species to a top consumer is called the food chain. The larger interlocking pattern of food chains in an ecological community creates a complex food web. Food webs are a type of concept map or a heuristic device that is used illustrate and study pathways of energy and material flows.^[7][74][75]

Generalized food web of waterbirds from Chesapeake Bay

Food webs are often limited relative to the real world. Complete empirical measurements are generally restricted to a specific habitat, such as a cave or a pond. Principles gleaned from food web microcosm studies are used to extrapolate smaller dynamic concepts to larger systems.^[76] Feeding relations require extensive investigations into the gut contents of organisms, which can be very difficult to decipher, or (more recently) stable isotopes can be used to trace the flow of nutrient diets and energy through a food web.^[77] While food webs often give an incomplete measure of ecosystems, they are nonetheless a valuable tool in understanding community ecosystems.^[78]

Food-webs exhibit principals of ecological emergence through the nature of trophic entanglement, where some species have many weak feeding links (e.g., omnivores) while some are more specialized with fewer stronger feeding links (e.g., primary predators). Theoretical and empirical studies identify non-random emergent patterns of few strong and many weak linkages that serve to explain how ecological communities remain stable over time.^[79] Food-webs have compartments, where the many strong interactions create subgroups among some members in a community and the few weak interactions occur between these subgroups. These compartments increase the stability of food-webs.^[80] As plants grow, they accumulate carbohydrates and are eaten by grazing herbivores. Step by step lines or relations are drawn until a web of life is illustrated.^{[75][81][82][83]}

Trophic levels[link]

A trophic pyramid (a) and a food-web (b) illustrating ecological relationships among creatures that are typical of a northern Boreal terrestrial ecosystem. The trophic pyramid roughly represents the biomass (usually measured as total dry-weight) at each level. Plants generally have the greatest biomass. Names of trophic categories are shown to the right of the pyramid. Some ecosystems, such as many wetlands, do not organize as a strict pyramid, because aquatic plants are not as productive as long-lived terrestrial plants such as trees. Ecological trophic pyramids are typically one of three kinds: 1) pyramid of numbers, 2) pyramid of biomass, or 3) pyramid of energy.^[6]

The Greek root of the word troph, τροφή, trophē, means food or feeding. Links in food-webs primarily connect feeding relations or trophism among species. Biodiversity within ecosystems can be organized into vertical and horizontal dimensions. The vertical dimension represents feeding relations that become further removed from the base of the food chain up toward top predators. A trophic level is defined as "a group of organisms acquiring a considerable majority of its energy from the adjacent level nearer the abiotic source."^[84]:383 The horizontal dimension represents the abundance or biomass at each level.^[85] When the relative abundance or biomass of each functional feeding group is stacked into their respective trophic levels they naturally sort into a 'pyramid of numbers'.^[86]

Functional groups are broadly categorized as autotrophs (or primary producers), heterotrophs (or consumers), and detrivores (or decomposers). Autotrophs are organisms that can produce their own food (production is greater than respiration) and are usually plants or cyanobacteria that are capable of photosynthesis but can also be other organisms such as bacteria near ocean vents that are capable of chemosynthesis. Heterotrophs are organisms that must feed on others for nourishment and energy (respiration exceeds production).^[6] Heterotrophs can be further sub-divided into different functional groups, including: primary consumers (strict herbivores), secondary consumers (carnivorous predators that feed exclusively on herbivores) and tertiary consumers (predators that feed on a mix of herbivores and predators).^[87] Omnivores do not fit neatly into a functional category because they eat both plant and animal tissues. It has been suggested that omnivores have a greater functional influence as predators because relative to herbivores they are comparatively inefficient at grazing.^[88]

Trophic levels are part of the holistic or complex systems view of ecosystems.^[89][90] Each trophic level contains unrelated species that grouped together because they share common ecological functions. Grouping functionally similar species into a trophic system gives a macroscopic image of the larger functional design.^[91] While the notion of trophic levels provides insight into energy flow and top-down control within food webs, it is troubled by the prevalence of omnivory in real ecosystems. This has lead some ecologists to "reiterate that the notion that species clearly aggregate into discrete, homogeneous trophic levels is fiction."^[92]:815 Nonetheless, recent studies have shown that real trophic levels do exist, but "above the herbivore trophic level, food webs are better characterized as a tangled web of omnivores."^[93]:612

Keystone species[link]

A keystone species is a species that is disproportionately connected to more species in the food-web. Keystone species have lower levels of biomass in the trophic pyramid relative to the importance of their role. The many connections that a keystone species holds means that it maintains the organization and structure of entire communities. The loss of a keystone species results in a range of dramatic cascading effects that alters trophic dynamics, other food-web connections and can cause the extinction of other species in the community.^[94][95]

Sea otters (Enhydra lutris) are commonly cited as an example of a keystone species because they limit the density of sea urchins that feed on kelp. If sea otters are removed from the system, the urchins graze until the kelp beds disappear and this has a dramatic effect on community structure.^[96] Hunting of sea otters, for example, is thought to have indirectly led to the extinction of the Steller's Sea Cow (Hydrodamalis gigas).^[97] While the keystone species concept has been used extensively as a conservation tool, it has been criticized for being poorly defined from an operational stance. It is very difficult to experimentally determine in each different ecosystem what species may hold a keystone role. Furthermore, food-web theory suggests that keystone species may not be all that common. It is therefore unclear how generally the keystone species model can be applied.^[96][98]

Soils[link]

Soil is the living top layer of mineral and organic dirt that covers the surface of the planet, it is the chief organizing centre of most ecosystem functions, and it is of critical importance in agricultural science and ecology. The decomposition of dead organic matter, such as leaves falling on the forest floor, turns into soils containing minerals and nutrients that feed into plant production. The total sum of the planet's soil ecosystems is called the pedosphere where a very large proportion of the Earth's biodiversity sorts into other trophic levels. Invertebrates that feed and shred larger leaves, for example, create smaller bits for smaller organisms in the feeding chain. Collectively, these are the detrivores that regulate soil formation. ^{[99][100][101][102]} Tree roots, fungi, bacteria, worms, ants, beetles, centipedes, spiders, mammals, birds, reptiles, amphibians and other less familiar creatures all work to create the trophic web of life in soil ecosystems. As organisms feed and migrate through soils they physically displace materials, which is an important ecological process called bioturbation. Bioturbation helps to aerate the soils, thus stimulating hetertrophic growth and production. Biomass of soil microorganisms are influenced by and feed back into the trophic dynamics of the exposed solar surface ecology. Paleoecological studies of soils places the origin for bioturbation to a time before the Cambrian period. Other events, such as the evolution of trees and amphibians moving into land in the Devonian period played a significant role in the development of the ecological trophism in soils.^{[67][102][103]}

Ecological complexity[link]

Complexity is easily understood as a large computational effort needed to piece together numerous interacting parts exceeding the iterative memory capacity of the human mind. Global patterns of biological diversity are complex. This biocomplexity stems from the interplay among ecological processes that operate and influence patterns at different scales that grade into each other, such as transitional areas or ecotones spanning landscapes.^[104] Complexity stems from the interplay among levels of biological organization as energy and matter is integrated into larger units that superimpose onto the smaller parts. "What were wholes on one level become parts on a higher one."^[105]:209 Small scale patterns do not necessarily explain large scale phenomena, otherwise captured in the expression (coined by Aristotle) 'the sum is greater than the parts'.^[106][107]

"Complexity in ecology is of at least six distinct types: spatial, temporal, structural, process, behavioral, and geometric."^[108]:3 Out of these principles, ecologists have identified emergent and self-organizing phenomena that operate at different environmental scales of influence, ranging from molecular to planetary, and these require different sets of scientific explanation at each integrative level.^[50][109] Ecological complexity relates to the dynamic resilience of ecosystems that transition to multiple shifting steady-states directed by random fluctuations of history.^[9][110] Long-term ecological studies provide important track records to better understand the complexity and resilience of ecosystems over longer temporal and broader spatial scales. The International Long Term Ecological Network^[111] manages and exchanges scientific information among research sites. The longest experiment in existence is the Park Grass Experiment that was initiated in 1856.^[112] Another example includes the Hubbard Brook study in operation since 1960.^[113]

Holism[link]

The biological organization of life self-organizes into layers of emergent whole systems that function according to nonreducible properties called holism. This means that higher order patterns of a whole functional system, such as an ecosystem, cannot be predicted or understood by a simple summation of the parts. "New properties emerge because the components interact, not because the basic nature of the components is changed."^[6]:8

Ecological studies are necessarily holistic as opposed to reductionistic.^{[109][114][editorializing]} Holism has three scientific meanings or uses that identify with: 1) the mechanistic complexity of ecosystems, 2) the practical description of patterns in quantitative reductionist terms where correlations may be identified but nothing is understood about the causal relations without reference to the whole system, which leads to 3) a metaphysical hierarchy whereby the causal relations of larger systems are understood without reference to the smaller parts. An example of the metaphysical aspect to holism is identified in the trend of increased exterior thickness in shells of different species. The reason for a thickness increase can be understood through reference to principals of natural selection via predation without need to reference or understand the biomolecular properties of the exterior shells.^[115]

Relation to evolution[link]

Ecology and evolution are considered sister disciplines of the life sciences. Natural selection, life history, development, adaptation, populations, and inheritance are examples of concepts that thread equally into ecological and evolutionary theory. Morphological, behavioral and/or genetic traits, for example, can be mapped onto evolutionary trees to study the historical development of a species in relation to their functions and roles in different ecological circumstances. In this framework, the analytical tools of ecologists and evolutionists overlap as they organize, classify and investigate life through common systematic principals, such as phylogenetics or the Linnaean system of taxonomy.^[116] The two disciplines often appear together, such as in the title of the journal Trends in Ecology and Evolution.^[117] There is no sharp boundary separating ecology from evolution and they differ more in their areas of applied focus. Both disciplines discover and explain emergent and unique properties and processes operating across different spatial or temporal scales of organization.^{[50][118][119]} While the boundary between ecology and evolution is not always clear, it is understood that ecologists study the abiotic and biotic factors that influence the evolutionary process.^[120][121]

Behavioral ecology[link]

Social display and color variation in differently adapted species of chameleons (Bradypodion spp.). Chameleons change their skin color to match their background as a behavioral defense mechanism and also use color to communicate with other members of their species, such as dominant (left) versus submissive (right) patterns shown in the three species (A-C) above.^[122]

All organisms are motile to some extent. Even plants express complex behavior, including memory and communication.^[123] Behavioral ecology is the study of an organism's behavior in its environment and its ecological and evolutionary implications. Ethology is the study of observable movement or behavior in animals. This could include investigations of motile sperm of plants, mobile phytoplankton, zooplankton swimming toward the female egg, the cultivation of fungi by weevils, the mating dance of a salamander, or social gatherings of amoeba.^{[124][125][126][127][128]}

Adaptation is the central unifying concept in behavioral ecology.^[129] Behaviors can be recorded as traits and inherited in much the same way that eye and hair color can. Behaviors evolve and become adapted to the ecosystem because they are subject to the forces of natural selection.^[15] Hence, behaviors can be adaptive, meaning that they evolve functional utilities that increases reproductive success for the individuals that inherit such traits.^[130] This is also the technical definition for fitness in biology, which is a measure of reproductive success over successive generations.^[15]

Predator-prey interactions are an introductory concept into food-web studies as well as behavioral ecology.^[131] Prey species can exhibit different kinds of behavioral adaptations to predators, such as avoid, flee or defend. Many prey species are faced with multiple predators that differ in the degree of danger posed. To be adapted to their environment and face predatory threats, organisms must balance their energy budgets as they invest in different aspects of their life history, such as growth, feeding, mating, socializing, or modifying their habitat. Hypotheses posited in behavioral ecology are generally based on adaptive principals of conservation, optimization or efficiency.^{[34][120][132]} For example,

"The threat-sensitive predator avoidance hypothesis predicts that prey should assess the degree of threat posed by different predators and match their behavior according to current levels of risk."^[133]

"The optimal flight initiation distance occurs where expected postencounter fitness is maximized, which depends on the prey's initial fitness, benefits obtainable by not fleeing, energetic escape costs, and expected fitness loss due to predation risk."^[134]

Symbiosis: Leafhoppers (Eurymela fenestrata) are protected by ants (Iridomyrmex purpureus) in a symbiotic relationship. The ants protect the leafhoppers from predators and in return the leafhoppers feeding on plants exude honeydew from their anus that provides energy and nutrients to tending ants.^[135]

Elaborate sexual displays and posturing are encountered in the behavioral ecology of animals. The birds of paradise, for example, display elaborate ornaments and song during courtship. These displays serve a dual purpose of signaling healthy or well-adapted individuals and desirable genes. The elaborate displays are driven by sexual selection as an advertisement of quality of traits among male suitors.^[136]

Social ecology[link]

Social ecological behaviors are notable in the social insects, slime moulds, social spiders, human society, and naked mole rats where eusocialism has evolved. Social behaviors include reciprocally beneficial behaviors among kin and nest mates.^{[15][126][137]} Social behaviors evolve from kin and group selection. Kin selection explains altruism through genetic relationships, whereby an altruistic behavior leading to death is rewarded by the survival of genetic copies distributed among surviving relatives. The social insects, including ants, bees and wasps are most famously studied for this type of relationship because the male drones are clones that share the same genetic make-up as every other male in the colony.^[15] In contrast, group selectionists find examples of altruism among non-genetic relatives and explain this through selection acting on the group, whereby it becomes selectively advantageous for groups if their members express altruistic behaviors to one another. Groups that are predominantly altruists beat groups that are predominantly selfish.^[15][138]

Coevolution[link]

Ecological interactions can be divided into host and associate relationships. A host is any entity that harbors another that is called the associate.^[139] Host and associate relationships among species that are mutually or reciprocally beneficial are called mutualisms. If the host and associate are physically connected, the relationship is called symbiosis. Approximately 60% of all plants, for example, have a symbiotic relationship with arbuscular mycorrhizal fungi. Symbiotic plants and fungi exchange carbohydrates for mineral nutrients.^[140] Symbiosis differs from indirect mutualisms where the organisms live apart. For example, tropical rainforests regulate the Earth's atmosphere. Trees living in the equatorial regions of the planet supply oxygen into the atmosphere that sustains species living in distant polar regions of the planet. This relationship is called commensalism because many other host species receive the benefits of clean air at no cost or harm to the associate tree species supplying the oxygen.^[141] The host and associate relationship is called parasitism if one species benefits while the other suffers. Competition among species or among members of the same species is defined as reciprocal antagonism, such as grasses competing for growth space.^[142]

Parasites: A harvestman arachnid is parasitized by mites. This is parasitism because the harvestman is being consumed as its juices are slowly sucked out while the mites gain all the benefits traveling on and feeding off of their host.

Popular ecological study systems for mutualism include, fungus-growing ants employing agricultural symbiosis, bacteria living in the guts of insects and other organisms, the fig wasp and yucca moth pollination complex, lichens with fungi and photosynthetic algae, and corals with photosynthetic algae.^[143][144] Nevertheless, many organisms exploit host rewards without reciprocating and thus have been branded with a myriad of not-very-flattering names such as 'cheaters', 'exploiters', 'robbers', and 'thieves'. Although cheaters impose several host cots (e.g., via damage to their reproductive organs or propagules, denying the services of a beneficial partner), their net effect on host fitness is not necessarily negative and, thus, becomes difficult to forecast.^[145][146]

Biogeography[link]

The word biogeography is an amalgamation of biology and geography. Biogeography is the comparative study of the geographic distribution of organisms and the corresponding evolution of their traits in space and time.^[147] The Journal of Biogeography was established in 1974.^[148] Biogeography and ecology share many of their disciplinary roots. For example, the theory of island biogeography, published by the mathematician Robert MacArthur and ecologist Edward O. Wilson in 1967^[149] is considered one of the fundamentals of ecological theory.^[150]

Biogeography has a long history in the natural sciences where questions arise concerning the spatial distribution of plants and animals. Ecology and evolution provide the explanatory context for biogeographical studies.^[147] Biogeographical patterns result from ecological processes that influence range distributions, such as migration and dispersal.^[150] and from historical processes that split populations or species into different areas.^[151] The biogeographic processes that result in the natural splitting of species explains much of the modern distribution of the Earth's biota. The splitting of lineages in a species is called vicariance biogeography and it is a sub-discipline of biogeography.^{[151][152][153]} There are also practical applications in the field of biogeography concerning ecological systems and processes. For example, the range and distribution of biodiversity and invasive species responding to climate change is a serious concern and active area of research in context of global warming.^[20][154]

[edit] r/K-Selection theory

A population ecology concept (introduced in MacArthur and Wilson's (1967) book, The Theory of Island Biogeography) is r/K selection theory, one of the first predictive models in ecology used to explain life-history evolution. The premise behind the r/K selection model is that natural selection pressures change according to population density. For example, when an island is first colonized, density of individuals is low. The initial increase in population size is not limited by competition, leaving an abundance of available resources for rapid population growth. These early phases of population growth experience density-independent forces of natural selection, which is called r-selection. As the population becomes more crowded, it approaches the island's carrying capacity, thus forcing individuals to compete more heavily for fewer available resources. Under crowded conditions the population experiences density-dependent forces of natural selection, called K-selection.^[155]

In the r/K-selection model, the first variable r is the intrinsic rate of natural increase in population size and the second variable K is the carrying capacity of a population.^[34] Different species evolve different life-history strategies spanning a continuum between these two selective forces. An r-selected species is one that has high birth rates, low levels of parental investment, and high rates of mortality before individuals reach maturity. Evolution favors high rates of fecundity in r-selected species. Many kinds of insects and invasive species exhibit r-selected characteristics. In contrast, a K-selected species has low rates of fecundity, high levels of parental investment in the young, and low rates of mortality as individuals mature. Humans and elephants are examples of species exhibiting K-selected characteristics, including longevity and efficiency in the conversion of more resources into fewer offspring.^[149][156]

Molecular ecology[link]

The important relationship between ecology and genetic inheritance predates modern techniques for molecular analysis. Molecular ecological research became more feasible with the development of rapid and accessible genetic technologies, such as the polymerase chain reaction (PCR). The rise of molecular technologies and influx of research questions into this new ecological field resulted in the publication Molecular Ecology in 1992.^[157] Molecular ecology uses various analytical techniques to study genes in an evolutionary and ecological context. In 1994, John Avise also played a leading role in this area of science with the publication of his book, Molecular Markers, Natural History and Evolution.^[158] Newer technologies opened a wave of genetic analysis into organisms once difficult to study from an ecological or evolutionary standpoint, such as bacteria, fungi and nematodes. Molecular ecology engendered a new research paradigm for investigating ecological questions considered otherwise intractable. Molecular investigations revealed previously obscured details in the tiny intricacies of nature and improved resolution into probing questions about behavioral and biogeographical ecology.^[158] For example, molecular ecology revealed promiscuous sexual behavior and multiple male partners in tree swallows previously thought to be socially monogamous.^[159] In a biogeographical context, the marriage between genetics, ecology and evolution resulted in a new sub-discipline called phylogeography.^[160]

Human ecology[link]

Human ecology is the interdisciplinary investigation into the ecology of our species. "Human ecology may be defined: (1) from a bio-ecological standpoint as the study of man as the ecological dominant in plant and animal communities and systems; (2) from a bio-ecological standpoint as simply another animal affecting and being affected by his physical environment; and (3) as a human being, somehow different from animal life in general, interacting with physical and modified environments in a distinctive and creative way. A truly interdisciplinary human ecology will most likely address itself to all three."^[161] The term human ecology was formally introduced in 1921, but many sociologists, geographers, psychologists, and other disciplines were interested in human relations to natural systems centuries prior, especially in the late 19th century.^[161][162] Some authors have identified a new unifying science in coupled human and natural systems that builds upon, but moves beyond the field human ecology.^[163] Ecology is as much a biological science as it is a human science.^[6] "Perhaps the most important implication involves our view of human society. Homo sapiens is not an external disturbance, it is a keystone species within the system. In the long term, it may not be the magnitude of extracted goods and services that will determine sustainability. It may well be our disruption of ecological recovery and stability mechanisms that determines system collapse."^[72]:3282

Relation to the environment[link]

The environment is dynamically interlinked, imposed upon and constrains organisms at any time throughout their life cycle.^[164] Like the term ecology, environment has different conceptual meanings and to many these terms also overlap with the concept of nature. Environment "...includes the physical world, the social world of human relations and the built world of human creation."^[165]:62 The environment in ecosystems includes both physical parameters and biotic attributes. The physical environment is external to the level of biological organization under investigation, including abiotic factors such as temperature, radiation, light, chemistry, climate and geology. The biotic environment includes genes, cells, organisms, members of the same species (conspecifics) and other species that share a habitat.^[166] The laws of thermodynamics applies to ecology by means of its physical state. Armed with an understanding of metabolic and thermodynamic principles a complete accounting of energy and material flow can be traced through an ecosystem.^[167]

Environmental and ecological relations are studied through reference to conceptually manageable and isolated parts. Once the effective environmental components are understood they conceptually link back together as a holocoenotic^[168] system. In other words, the organism and the environment form a dynamic whole (or umwelt).^[169]:252 Change in one ecological or environmental factor can concurrently affect the dynamic state of an entire ecosystem.^[170][171]

Disturbance and resilience[link]

Ecosystems are regularly confronted with natural environmental variations and disturbances over time and geographic space. A disturbance is any process that removes living biomass from a community, such as a fire, flood, drought, or predation.^[172] Fluctuations causing disturbance occur over vastly different ranges in terms of magnitudes as well as distances and time periods.^[173] Disturbances, such as fire, are both cause and product of natural fluctuations in death rates, species assemblages, and biomass densities within an ecological community. These disturbances create places of renewal where new directions emerge out of the patchwork of natural experimentation and opportunity.^{[172][174] [175]} Ecological resilience is a cornerstone theory in ecosystem management. Biodiversity fuels the resilience of ecosystems acting as a kind of regenerative insurance.^[175]

Metabolism and the early atmosphere[link]

The Earth formed approximately 4.5 billion years ago^[177] and environmental conditions were too extreme for life to form for the first 500 million years. During this early Hadean period, the Earth started to cool, allowing a crust and oceans to form. Environmental conditions were unsuitable for the origins of life for the first billion years after the Earth formed. The Earth's atmosphere transformed from being dominated by hydrogen, to one composed mostly of methane and ammonia. Over the next billion years the metabolic activity of life transformed the atmosphere to higher concentrations of carbon dioxide, nitrogen, and water vapor. These gases changed the way that light from the sun hit the Earth's surface and greenhouse effects trapped heat. There were untapped sources of free energy within the mixture of reducing and oxidizing gasses that set the stage for primitive ecosystems to evolve and, in turn, the atmosphere also evolved.^[178]

The leaf is the primary site of photosynthesis in most plants.

Throughout history, the Earth's atmosphere and biogeochemical cycles have been in a dynamic equilibrium with planetary ecosystems. The history is characterized by periods of significant transformation followed by millions of years of stability.^[179] The evolution of the earliest organisms, likely anaerobic methanogen microbes, started the process by converting atmospheric hydrogen into methane (4H₂ + CO₂ → CH₄ + 2H₂O). Anoxygenic photosynthesis converting hydrogen sulfide into other sulfur compounds or water (for example 2H₂S + CO₂ + hv → CH₂O + H₂O + 2S), as occurs in deep sea hydrothermal vents today, reduced hydrogen concentrations and increased atmospheric methane. Early forms of fermentation also increased levels of atmospheric methane. The transition to an oxygen dominant atmosphere (the Great Oxidation) did not begin until approximately 2.4-2.3 billion years ago, but photosynthetic processes started 0.3 to 1 billion years prior.^[179][180]

Radiation: heat, temperature and light[link]

The biology of life operates within a certain range of temperatures. Heat is a form of energy that regulates temperature. Heat affects growth rates, activity, behavior and primary production. Temperature is largely dependent on the incidence of solar radiation. The latitudinal and longitudinal spatial variation of temperature greatly affects climates and consequently the distribution of biodiversity and levels of primary production in different ecosystems or biomes across the planet. Heat and temperature relate importantly to metabolic activity. Poikilotherms, for example, have a body temperature that is largely regulated and dependent on the temperature of the external environment. In contrast, homeotherms regulate their internal body temperature by expending metabolic energy.^{[120][121][167]}

There is a relationship between light, primary production, and ecological energy budgets. Sunlight is the primary input of energy into the planet's ecosystems. Light is composed of electromagnetic energy of different wavelengths. Radiant energy from the sun generates heat, provides photons of light measured as active energy in the chemical reactions of life, and also acts as a catalyst for genetic mutation.^{[120][121][167]} Plants, algae, and some bacteria absorb light and assimilate the energy through photosynthesis. Organisms capable of assimilating energy by photosynthesis or through inorganic fixation of H₂S are autotrophs. Autotrophs—responsible for primary production—assimilate light energy that becomes metabolically stored as potential energy in the form of biochemical enthalpic bonds.^{[120][121][167]}

Physical environments[link]

Water[link]

The rate of diffusion of carbon dioxide and oxygen is approximately 10,000 times slower in water than it is in air. When soils become flooded, they quickly lose oxygen and transform into a low-concentration (hypoxic - O₂ concentration lower than 2 mg/liter) environment and eventually become completely (anoxic) environment where anaerobic bacteria thrive among the roots. Water also influences the spectral composition and amount of light as it reflects off the water surface and submerged particles.^[181] Aquatic plants exhibit a wide variety of morphological and physiological adaptations that allow them to survive, compete and diversify these environments. For example, the roots and stems develop large air spaces (Aerenchyma) that regulate the efficient transportation gases (for example, CO₂ and O₂) used in respiration and photosynthesis. In drained soil, microorganisms use oxygen during respiration. In aquatic environments, anaerobic soil microorganisms use nitrate, manganese ions, ferric ions, sulfate, carbon dioxide and some organic compounds. The activity of soil microorganisms and the chemistry of the water reduces the oxidation-reduction potentials of the water. Carbon dioxide, for example, is reduced to methane (CH₄) by methanogenic bacteria. Salt water plants (or halophytes) have specialized physiological adaptations, such as the development of special organs for shedding salt and osmo-regulate their internal salt (NaCl) concentrations, to live in estuarine, brackish, or oceanic environments.^[181] The physiology of fish is also specially adapted to deal with high levels of salt through osmoregulation. Their gills form electrochemical gradients that mediate salt excresion in saline environments and uptake in fresh water.^[182]

Gravity[link]

The shape and energy of the land is affected to a large degree by gravitational forces. On a larger scale, the distribution of gravitational forces on the earth are uneven and influence the shape and movement of tectonic plates as well as having an influence on geomorphic processes such as orogeny and erosion. These forces govern many of the geophysical properties and distributions of ecological biomes across the Earth. On a organism scale, gravitational forces provide directional cues for plant and fungal growth (gravitropism), orientation cues for animal migrations, and influence the biomechanics and size of animals.^[120] Ecological traits, such as allocation of biomass in trees during growth are subject to mechanical failure as gravitational forces influence the position and structure of branches and leaves.^[183] The cardiovascular systems of all animals are functionally adapted to overcome pressure and gravitational forces that change according to the features of organisms (e.g., height, size, shape), their behavior (e.g., diving, running, flying), and the habitat occupied (e.g., water, hot deserts, cold tundra).^[184]

Pressure[link]

Climatic and osmotic pressure places physiological constraints on organisms, such as flight and respiration at high altitudes, or diving to deep ocean depths. These constraints influence vertical limits of ecosystems in the biosphere as organisms are physiologically sensitive and adapted to atmospheric and osmotic water pressure differences.^[120] Oxygen levels, for example, decrease with increasing pressure and are a limiting factor for life at higher altitudes.^[185] Water transportation through trees is another important ecophysiological parameter where osmotic pressure gradients factor in.^{[186][187][188]} Water pressure in the depths of oceans requires that organisms adapt to these conditions. For example, mammals, such as whales, dolphins and seals are specially adapted to deal with changes in sound due to water pressure differences.^[189] Different species of hagfish provide another example of adaptation to deep-sea pressure through specialized protein adaptations.^[190]

Wind and turbulence[link]

Turbulent forces in air and water have significant effects on the environment and ecosystem distribution, form and dynamics. On a planetary scale, ecosystems are affected by circulation patterns in the global trade winds. Wind power and the turbulent forces it creates can influence heat, nutrient, and biochemical profiles of ecosystems.^[120] For example, wind running over the surface of a lake creates turbulence, mixing the water column and influencing the environmental profile to create thermally layered zones, partially governing how fish, algae, and other parts of the aquatic ecology are structured.^[193][194] Wind speed and turbulence also exert influence on rates of evapotranspiration rates and energy budgets in plants and animals.^[181][195] Wind speed, temperature and moisture content can vary as winds travel across different landfeatures and elevations. The westerlies, for example, come into contact with the coastal and interior mountains of western North America to produce a rain shadow on the leeward side of the mountain. The air expands and moisture condenses as the winds move up in elevation which can cause precipitation; this is called orographic lift. This environmental process produces spatial divisions in biodiversity, as species adapted to wetter conditions are range-restricted to the coastal mountain valleys and unable to migrate across the xeric ecosystems of the Columbia Basin to intermix with sister lineages that are segregated to the interior mountain systems.^[196][197]

Fire[link]

Plants convert carbon dioxide into biomass and emit oxygen into the atmosphere.^[198] Approximately 350 million years ago (near the Devonian period) the photosynthetic process brought the concentration of atmospheric oxygen above 17%, which allowed combustion to occur.^[199] Fire releases CO₂ and converts fuel into ash and tar. Fire is a significant ecological parameter that raises many issues pertaining to its control and suppression in management.^[200] While the issue of fire in relation to ecology and plants has been recognized for a long time,^[201] Charles Cooper brought attention to the issue of forest fires in relation to the ecology of forest fire suppression and management in the 1960s.^[202][203]

Fire creates environmental mosaics and a patchiness to ecosystem age and canopy structure. Native North Americans were among the first to influence fire regimes by controlling their spread near their homes or by lighting fires to stimulate the production of herbaceous foods and basketry materials.^[204] The altered state of soil nutrient supply and cleared canopy structure also opens new ecological niches for seedling establishment.^[205][206] Most ecosystem are adapted to natural fire cycles. Plants, for example, are equipped with a variety of adaptations to deal with forest fires. Some species (e.g., Pinus halepensis) cannot germinate until after their seeds have lived through a fire. This environmental trigger for seedlings is called serotiny.^[207] Some compounds from smoke also promote seed germination.^[208] Fire plays a major role in the persistence and resilience of ecosystems.^[174]

Biogeochemistry[link]

Ecologists study and measure nutrient budgets to understand how these materials are regulated, flow, and recycled through the environment.^{[120][121][167]} This research has led to an understanding that there is a global feedback between ecosystems and the physical parameters of this planet including minerals, soil, pH, ions, water and atmospheric gases. There are six major elements, including H (hydrogen), C (carbon), N (nitrogen), O (oxygen), S (sulfur), and P (phosphorus) that form the constitution of all biological macromolecules and feed into the Earth's geochemical processes. From the smallest scale of biology the combined effect of billions upon billions of ecological processes amplify and ultimately regulate the biogeochemical cycles of the Earth. Understanding the relations and cycles mediated between these elements and their ecological pathways has significant bearing toward understanding global biogeochemistry.^[209]

The ecology of global carbon budgets gives one example of the linkage between biodiversity and biogeochemistry. For starters, the Earth's oceans are estimated to hold 40,000 gigatonnes (Gt) carbon, vegetation and soil is estimated to hold 2070 Gt carbon, and fossil fuel emissions are estimated to emit an annual flux of 6.3 Gt carbon.^[210] At different times in the Earth's history there has been major restructuring in these global carbon budgets that was regulated to a large extent by the ecology of the land. For example, through the early-mid Eocene volcanic outgassing, the oxidation of methane stored in wetlands, and seafloor gases increased atmospheric CO₂ (carbon dioxide) concentrations to levels as high as 3500 ppm.^[211] In the Oligocene, from 25 to 32 million years ago, there was another significant restructuring in the global carbon cycle as grasses evolved a special type of C4 photosynthesis and expanded their ranges. This new photosynthetic pathway evolved in response to the drop in atmospheric CO₂ concentrations below 550 ppm.^[212] These kinds of ecosystem functions feed back significantly into global atmospheric models for carbon cycling. Loss in the abundance and distribution of biodiversity causes global carbon cycle feedbacks that are expected to increase rates of global warming in the next century.^[213] The effect of global warming melting large sections of permafrost creates a new mosaic of flooded areas where decomposition results in the emission of methane (CH₄). Hence, there is a relationship between global warming, decomposition and respiration in soils and wetlands producing significant climate feedbacks and altered global biogeochemical cycles.^[214][215] There is concern over increases in atmospheric methane in the context of the global carbon cycle, because methane is also a greenhouse gas that is 23 times more effective at absorbing long-wave radiation than CO₂ on a 100 year time scale.^[216]

History[link]

Early beginnings[link]

Ecology has a complex origin due in large part to its interdisciplinary nature.^[217] Ancient philosophers of Greece, including Hippocrates and Aristotle were among the first to record their observations on natural history. However, philosophers in ancient Greece viewed life as a static element that did not require an understanding of adaptation, a modern cornerstone of ecological theory.^[218] Topics more familiar in the modern context, including food chains, population regulation, and productivity, did not develop until the 1700s through the published works of microscopist Antoni van Leeuwenhoek (1632–1723) and botanist Richard Bradley (1688?-1732).^[6] Biogeographer Alexander von Humbolt (1769–1859) was another early pioneer in ecological thinking and was among the first to recognize ecological gradients. Humbolt alluded to the modern ecological law of species to area relationships.^[219][220]

In the early 20th century, ecology was an analytical form of natural history.^[221] Following in the traditions of Aristotle, the descriptive nature of natural history examined the interaction of organisms with both their environment and their community. Natural historians, including James Hutton and Jean-Baptiste Lamarck, contributed significant works that laid the foundations of the modern ecological sciences.^[222] The term "ecology" (German: Oekologie) is of a more recent origin and was first coined by the German biologist Ernst Haeckel in his book Generelle Morphologie der Organismen (1866). Haeckel was a zoologist, artist, writer, and later in life a professor of comparative anatomy.^[223][224]

Opinions differ on who was the founder of modern ecological theory. Some mark Haeckel's definition as the beginning,^[226] others say it was Eugenius Warming with the writing of Oecology of Plants: An Introduction to the Study of Plant Communities (1895).^[227] Ecology may also be thought to have begun with Carl Linnaeus' research principals on the economy of nature that matured in the early 18th century.^[81][228] He founded an early branch of ecological study he called the economy of nature.^[81] The works of Linnaeus influenced Darwin in The Origin of Species where he adopted the usage of Linnaeus' phrase on the economy or polity of nature.^[223] Linnaeus was the first to frame the balance of nature as a testable hypothesis. Haeckel, who admired Darwin's work, defined ecology in reference to the economy of nature which has led some to question if ecology is synonymous with Linnaeus' concepts for the economy of nature.^[228]

The modern synthesis of ecology is a young science, which first attracted substantial formal attention at the end of the 19th century (around the same time as evolutionary studies) and become even more popular during the 1960s environmental movement,^[222] though many observations, interpretations and discoveries relating to ecology extend back to much earlier studies in natural history. For example, the concept on the balance or regulation of nature can be traced back to Herodotos (died c. 425 BC) who described an early account of mutualism along the Nile river where crocodiles open their mouths to beneficially allow sandpipers safe access to remove leeches.^[217] In the broader contributions to the historical development of the ecological sciences, Aristotle is considered one of the earliest naturalists who had an influential role in the philosophical development of ecological sciences. One of Aristotle's students, Theophrastus, made astute ecological observations about plants and posited a philosophical stance about the autonomous relations between plants and their environment that is more in line with modern ecological thought. Both Aristotle and Theophrastus made extensive observations on plant and animal migrations, biogeography, physiology, and their habits in what might be considered an analog of the modern ecological niche.^[229][230] Hippocrates, another Greek philosopher, is also credited with reference to ecological topics in its earliest developments.^[6]

The layout of the first ecological experiment, noted by Charles Darwin in The Origin of Species, was studied in a grass garden at Woburn Abbey in 1817. The experiment studied the performance of different mixtures of species planted in different kinds of soils.^[231][232]

From Aristotle to Darwin the natural world was predominantly considered static and unchanged since its original creation. Prior to The Origin of Species there was little appreciation or understanding of the dynamic and reciprocal relations between organisms, their adaptations and their modifications to the environment.^[233][225] While Charles Darwin is most notable for his treatise on evolution,^[234] he is also one of the founders of soil ecology.^[235] In The Origin of Species Darwin also made note of the first ecological experiment that was published in 1816.^[231] In the science leading up to Darwin the notion of evolving species was gaining popular support. This scientific paradigm changed the way that researchers approached the ecological sciences.^[236]

After the turn of 20th century[link]

Some suggest that the first ecological text (Natural History of Selborne) was published in 1789, by Gilbert White (1720–1793).^[238] The first American ecology book was published in 1905 by Frederic Clements.^[239] In his book, Clements forwarded the idea of plant communities as a superorganism. This publication launched a debate between ecological holism and individualism that lasted until the 1970s. The Clements superorganism concept proposed that ecosystems progress through regular and determined stages of seral development that are analogous to developmental stages of an organism whose parts function to maintain the integrity of the whole. The Clementsian paradigm was challenged by Henry Gleason.^[240] According to Gleason, ecological communities develop from the unique and coincidental association of individual organisms. This perceptual shift placed the focus back onto the life histories of individual organisms and how this relates to the development of community associations.^[241]

The Clementsian superorganism theory has not been completely rejected, but some suggest it was an overextended application of holism.^[115] Holism remains a critical part of the theoretical foundation in contemporary ecological studies.^[163] Holism was first introduced in 1926 by a polarizing historical figure, a South African General named Jan Christian Smuts. Smuts was inspired by Clement's superorganism theory as he developed and published on the concept of holism, which contrasts starkly against his racial political views as the father of apartheid.^[242] Around the same time, Charles Elton pioneered the concept of food chains in his classical book "Animal Ecology".^[86] Elton^[86] defined ecological relations using concepts of food chains, food cycles, food size, and described numerical relations among different functional groups and their relative abundance. Elton's 'food cycle' was replaced by 'food web' in a subsequent ecological text.^[243]

Ecology has developers in many nations, including Russia's Vladimir Vernadsky and his founding of the biosphere concept in the 1920s^[244] or Japan's Kinji Imanishi and his concepts of harmony in nature and habitat segregation in the 1950s.^[245] The scientific recognition or importance of contributions to ecology from other cultures is hampered by language and translation barriers.^[244]

See also[link]

	Ecology portal
	Environment portal
	Biology portal
	Earth sciences portal
	Sustainable development portal

Lists[link]

References[link]